Pairwise Alignments

Query, 447 a.a., sodium:proton antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 507 a.a., hypothetical Na+/H+ antiporter (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 70.9 bits (172), Expect = 9e-17
 Identities = 68/221 (30%), Positives = 103/221 (46%), Gaps = 23/221 (10%)

Query: 17  LLPLMVFLLLFMGVGSYLTWQGVEFAFYQLPA------------PVAVLPAVVLAIALSK 64
           LL + +  LL   VG  L W G +    Q+PA              A+  A +L+  ++ 
Sbjct: 250 LLAIPMLTLLCASVGLTL-WSGAQ----QVPAWDISAWLASADIGAAMRDACLLSTLVTL 304

Query: 65  ESL---NRAIEQFLRGVGHS-DIMAMCIIYLLAG-AFAAVAKATGGVDATVNLGLALLPA 119
             L    R+I + L  + H   ++A  I  LL      AV +  G      +     L  
Sbjct: 305 GLLIMSGRSIGKLLGDLAHGVRMIAFAIAILLCTWMIGAVIQDLGVASLLADWAKWYLSP 364

Query: 120 SLILPGLFVISAFVATAMGTSMGTIAAIAPVALGIAQAADLNLGLTA-GVVLSGAMFGDN 178
           SL++ G+F++ A +A A G+S GT A + P+   IA   D +L L     V++G++FGD+
Sbjct: 365 SLLVAGMFLLCAIMAFATGSSWGTFAIMIPIGGEIAHNMDASLLLPVLSAVMAGSVFGDH 424

Query: 179 LSIISDTTIAATRSQGCHMRDKFKENIRIALPAALLALVVF 219
            S ISDT++ +  S GC   D     +  AL AA  ALV F
Sbjct: 425 CSPISDTSVLSATSSGCLPHDHVVTQLPFALIAAFAALVGF 465



 Score = 33.5 bits (75), Expect = 2e-05
 Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 26/190 (13%)

Query: 237 LKVLPYLTILVLAVMGLNVFLVLLVGILMAAGVGGLSD-----GYSLSALTKDVYAGFGN 291
           L +LP    LVLA+      + L VGIL  A +    D      Y L    K  Y+    
Sbjct: 6   LAILPLFLTLVLALWLRRTLVALGVGILSGALIIAHFDIVQSVSYLLEIGVKQFYSQDAW 65

Query: 292 MQ---EIFLLSMLIGGMGELMKQQGGLAFLTHHISRMIDKFARSHSDVQKMRASELGIAG 348
                 +    +L+G M +L+ + G +      + R I             R       G
Sbjct: 66  QWWHLNVLTAMLLLGSMTQLLARSGAVGLFGDWLYRRI-------------RTGRQARVG 112

Query: 349 LVALTNVCTANNTVAIIVSGGVAKELAEHNGVTAKRSASLLDIFSCIMQGVLPYGA---- 404
           +V L  +   +   + +  G V + L++  G+  ++ A L+D  +  +  +LP+ +    
Sbjct: 113 VVLLGWLVFIDGIFSCLAVGHVCQPLSQRYGIRQEQLAYLVDSNASPLCSLLPFSSWGPY 172

Query: 405 -QALLLGSIF 413
             ALL G  F
Sbjct: 173 VMALLAGLSF 182