Pairwise Alignments

Query, 447 a.a., sodium:proton antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 501 a.a., Na+/H+ antiporter NhaC (RefSeq) from Shewanella sp. ANA-3

 Score = 69.3 bits (168), Expect = 3e-16
 Identities = 52/165 (31%), Positives = 81/165 (49%), Gaps = 5/165 (3%)

Query: 57  VLAIALSKESLNRAIEQFLRGVGHSDIMAMCIIYLLAG-AFAAVAKATGGVDATVNLGLA 115
           ++ + LS  S+ + +     GV    ++A  I  LL      AV +  G      +    
Sbjct: 298 LVLLMLSGRSIGKLLGDLAHGVR---MIAFAIAILLCTWMIGAVIQDLGVASLLASWAKL 354

Query: 116 LLPASLILPGLFVISAFVATAMGTSMGTIAAIAPVALGIAQAADLNLGLTA-GVVLSGAM 174
            L  SL++ G+F++ A +A A G+S GT A + P+   IA   D +L L     V++G++
Sbjct: 355 YLSPSLLVAGMFLLCAIMAFATGSSWGTFAIMLPIGGEIAHNMDASLLLPVLSAVMAGSV 414

Query: 175 FGDNLSIISDTTIAATRSQGCHMRDKFKENIRIALPAALLALVVF 219
           FGD+ S ISDT++ +  S GC   D     +  AL  A  ALV F
Sbjct: 415 FGDHCSPISDTSVLSATSSGCLPHDHVVTQLPFALIGAGAALVGF 459



 Score = 36.2 bits (82), Expect = 2e-06
 Identities = 44/190 (23%), Positives = 76/190 (40%), Gaps = 26/190 (13%)

Query: 237 LKVLPYLTILVLAVMGLNVFLVLLVGILMAAGVGGLSD-----GYSLSALTKDVYAGFGN 291
           L +LP L  LVLA+      + L VGIL  A +    D     GY L    K  Y+    
Sbjct: 6   LAILPLLLTLVLALWLRRTLVALGVGILSGALIIAQFDILQSLGYLLEIGAKQFYSQDAW 65

Query: 292 M---QEIFLLSMLIGGMGELMKQQGGLAFLTHHISRMIDKFARSHSDVQKMRASELGIAG 348
                 + +  +L+G M +L+ + G +      + R             ++R       G
Sbjct: 66  QWWHLNVLMAMLLLGSMTQLLARSGAVEQFGDWLYR-------------RIRTGRQARIG 112

Query: 349 LVALTNVCTANNTVAIIVSGGVAKELAEHNGVTAKRSASLLDIFSCIMQGVLPYGA---- 404
           +V L  +   +   + +  G V + L++  G+   + A L+D  +  +  +LP+ +    
Sbjct: 113 VVLLGWLVFIDGIFSCLAVGHVCQPLSQRYGIRQTQLAYLVDSNASPLCSLLPFSSWGPY 172

Query: 405 -QALLLGSIF 413
             ALL G  F
Sbjct: 173 VMALLAGLSF 182