Pairwise Alignments

Query, 447 a.a., sodium:proton antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 522 a.a., Na+/H+ antiporter NhaC (RefSeq) from Shewanella sp. ANA-3

 Score = 69.7 bits (169), Expect = 2e-16
 Identities = 64/222 (28%), Positives = 110/222 (49%), Gaps = 25/222 (11%)

Query: 15  FALLPLMVFLLLFMGVGS---YLTWQGVEF----AFYQLPAPVAVLPAVVLAIALSKE-S 66
           F  + ++VF  L+  V S    LT +G+EF    AF +     ++    ++ +A++   +
Sbjct: 269 FLPITVLVFATLYFMVDSGAQVLTKEGIEFNIISAFEKTDVSSSLFFGALIGLAVALVLN 328

Query: 67  LNRAIEQFL--RGVGHSDIMAMCIIYLLAGAFAAVAKATGGVD--------ATVNLGLAL 116
           L + +E+ +  +GV       +  IY+L  A+  +A   G ++        AT N+  A 
Sbjct: 329 LVQGVEKSMVVKGVVQGARSMLPAIYILLFAWT-IAGVIGQLETGKFMASLATGNIPFAF 387

Query: 117 LPASLILPGLFVISAFVATAMGTSMGTIAAIAPVALGIAQAADLNLGLTA-GVVLSGAMF 175
           LPA +     FV++   A + GTS GT   + P+A  +A  +   + L     VL+GA+F
Sbjct: 388 LPALM-----FVLAGLTAFSTGTSWGTFGIMLPIAADMAMGSHTAMMLPMLASVLAGAVF 442

Query: 176 GDNLSIISDTTIAATRSQGCHMRDKFKENIRIALPAALLALV 217
           GD+ S ISDTTI ++    CH  D     +  A+  AL+++V
Sbjct: 443 GDHCSPISDTTILSSTGASCHHIDHVVTQLPYAVIVALISMV 484



 Score = 28.1 bits (61), Expect = 7e-04
 Identities = 42/188 (22%), Positives = 81/188 (43%), Gaps = 25/188 (13%)

Query: 237 LKVLPYLTILVLAVMGLNVFLVL----LVGILMAAGVGGLSDGYSLSALTKDVYAGFG-- 290
           L +LP +  +VLA+    V L L    ++G+L+      ++ G  L    K ++      
Sbjct: 11  LSLLPPVVAIVLAIFTRRVLLSLGLGIVIGVLLLNQFSPVASGEFLFNSVKGLFWSEDGV 70

Query: 291 NMQEIFLLSMLIGGMGELMKQQGGLAFLTHHISRMIDKFARSHSDVQKMRASELGIAGLV 350
           N   +++L  LI            L  +T  I+  +   AR+ +D  ++       A L+
Sbjct: 71  NSWNLYILGFLI-----------VLGMITALIT--VSGSARAFADWARLHIRNKRDAKLL 117

Query: 351 ALTNVCTA--NNTVAIIVSGGVAKELAEHNGVTAKRSASLLDIFS---CIMQGVLPYGAQ 405
            +   C    ++    +V G VA+ + +   ++  + A LLD  +   C++  V  +GA 
Sbjct: 118 TMFLGCVVFIDDYFNSLVVGSVARPVTDRYYISRAKLAYLLDSTAAPVCVISPVSSWGAY 177

Query: 406 AL-LLGSI 412
            + L+G I
Sbjct: 178 IIALIGGI 185