Pairwise Alignments

Query, 334 a.a., response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 977 a.a., periplasmic sensor hybrid histidine kinase from Synechococcus elongatus PCC 7942

 Score = 56.2 bits (134), Expect = 3e-12
 Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 6/123 (4%)

Query: 5   VLICDDSPLARKQMARSLPASLNADITFAVHGLDAMGILEKQSFKLMFLDLTMPELDGFE 64
           VL+ DD P AR+ + R L       +T A  G + +   ++    L+ LDL MP++DG+ 
Sbjct: 735 VLVVDDEPSARELLRRMLEKEGYRVVT-AAGGAEGLQRAQELRPALITLDLMMPQVDGWS 793

Query: 65  TLEAMGKKGYTT--PVVVVSGDIQPKAKERVLALGAKAFIQKPIDKNVLNDVLKMLVEPP 122
            L A+         PVV+VS     + +    ALGA  ++ KPID++ L  +L+    P 
Sbjct: 794 VLTALKADPMLAEIPVVMVS---MVEGRSLSYALGAADYLHKPIDRDQLRRILERYTHPD 850

Query: 123 TQP 125
            QP
Sbjct: 851 RQP 853



 Score = 40.8 bits (94), Expect = 1e-07
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 6/93 (6%)

Query: 6   LICDDSPLARKQMARSLPASLNADITFAVHGLDAMGILE--KQSFKLMFLDLTMPELDGF 63
           L+ +D P+ R  + R L       +  A  G   + +LE  +Q   L+ LDL MP++DGF
Sbjct: 856 LVIEDDPVNRS-LLRQLLERDGWQVAEANQGQQGLAVLESLEQPPDLILLDLMMPQMDGF 914

Query: 64  ETLEAMGKKG--YTTPVVVVSG-DIQPKAKERV 93
             ++A+   G   T PV+VV+  D+  + ++R+
Sbjct: 915 AFVDALRANGNWQTLPVIVVTAKDLTEQDRQRL 947