Pairwise Alignments

Query, 334 a.a., response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1306 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score = 63.9 bits (154), Expect = 2e-14
 Identities = 37/112 (33%), Positives = 64/112 (57%), Gaps = 6/112 (5%)

Query: 5    VLICDDSPLARKQMARSLPASLNADITFAVHGLDAMGILEKQ---SFKLMFLDLTMPELD 61
            +L+ +D+ +  +Q+A  L  S+ A +T A  GL A+ +LE+    SF L+ +DL MP LD
Sbjct: 970  ILLAEDNEI-NQQIAVELLQSMGAQVTVAGDGLQAVELLERSPDDSFDLVLMDLQMPHLD 1028

Query: 62   GFETLEAMG--KKGYTTPVVVVSGDIQPKAKERVLALGAKAFIQKPIDKNVL 111
            G++  E +   ++    P++ ++    P+ +ER LA+G    + KPID   L
Sbjct: 1029 GYDATERLRCQQRFAHLPILAMTAHAMPEERERCLAIGMNDHLAKPIDPTAL 1080



 Score = 50.8 bits (120), Expect = 2e-10
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 11/140 (7%)

Query: 5   VLICDDSPLARKQMARSLPASLNADITFAVHGLDAMGILEKQS-----FKLMFLDLTMPE 59
           VL+ DD+  AR+ +  +L   L+        G +A+  L +       ++++FLD  MP+
Sbjct: 825 VLVADDNGAAREILGEAL-RHLDLRPDLVASGAEALAQLTEMQGGADPYRVLFLDWQMPD 883

Query: 60  LDGFETLEAMGK---KGYTTPVVVVSGDIQPKAKERVLALGAKAFIQKPIDKNVLNDVLK 116
           LDG  TL  + +   +     VV+V+   Q + + +   LG    + KP+  + L DVL 
Sbjct: 884 LDGVSTLHKLQQALPQAQWPRVVMVTAYDQEELRRQTENLGICGILVKPVSASTLFDVLV 943

Query: 117 MLVEPPTQPRIVTPVSVELP 136
            LV+    P   TP+ +  P
Sbjct: 944 SLVDADNAP--ATPLHIAAP 961