Pairwise Alignments

Query, 334 a.a., response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 237 a.a., DNA-binding response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 57.0 bits (136), Expect = 5e-13
 Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 8/132 (6%)

Query: 5   VLICDDSPLARKQMARSLPASLNADITFAVHGLDAMGILEKQSFKLMFLDLTMPELDGFE 64
           +L+ DD PL R  +   L A    ++  AV+G++ +  +   +  ++ LDL MP++DGFE
Sbjct: 14  ILLVDDDPLFRVWLTDVLKAQ-GHEVKCAVNGVEGLTCIRSFAPDIVMLDLVMPQMDGFE 72

Query: 65  TLEAMGKKGYTTPVVVVSGDIQPKAKERVLALGAKAFIQKPIDKNV----LNDVLKMLVE 120
            L+A   +   TP++++S     + + R   LGA  F+ KP         L  + + LV+
Sbjct: 73  LLQA---RECMTPIMMLSARDNEEDRIRSYELGADDFLTKPFSIKELLVRLQAIERRLVQ 129

Query: 121 PPTQPRIVTPVS 132
            P  P  V  V+
Sbjct: 130 RPKPPMAVEQVA 141