Pairwise Alignments

Query, 402 a.a., NupC/NupG family nucleoside CNT transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., NupC family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  347 bits (891), Expect = e-100
 Identities = 180/399 (45%), Positives = 266/399 (66%), Gaps = 7/399 (1%)

Query: 7   IIGVTVLILCAYLLSESRSAINWKTISRALLLQIGFAALVLYFPLGQTALSSLSNGVSGL 66
           I+G+ VL+    L S++RS I+W+ +  A  + I  A  VL   +G   L ++SN V  +
Sbjct: 5   ILGIFVLLGVGLLFSDNRSLISWRAVIGAFGIIIALAFFVLATEIGADVLLAVSNTVGKV 64

Query: 67  LGFADVGIRFLFGDLAD-----TGFIFAVRVLPIIIFFSALISALYYLGVMQKVIALIGG 121
            G+   GI+F FG L +      GF++A++VLP IIF +AL S LYYLG+MQ  + +IGG
Sbjct: 65  FGYGTEGIKFAFGSLVNFSVEGIGFVWALQVLPQIIFTAALTSLLYYLGIMQWFVLIIGG 124

Query: 122 GIQRFLGTSKAESLVATGNIFLSQGESPLLVRPFLANMTRSELFAVMAGGMASVAGSVLG 181
            +Q+ LGTS+AES+ A GNI L Q E+PLL++P+   +TR+++FAVM GG++S+AGS+L 
Sbjct: 125 SLQKVLGTSRAESMNAAGNIILGQTEAPLLIKPYHRVLTRAQIFAVMVGGLSSIAGSILA 184

Query: 182 GYAGLGVELKYLIAASFMAAPGSLMMAKIIVPERGVPIDQSQVELDKAQDSNLIDALASG 241
           G AG+GV L YLI A FM+AP  LM AK+++PE    +++     D  + S+ IDA+A G
Sbjct: 185 GLAGMGVALNYLIMACFMSAPAGLMFAKLLIPETEPTVNEVPELPDDEKPSSFIDAIAKG 244

Query: 242 AMNGMKVAVAVGTMLIAFVSVIAMVNTGLENLGDLVGFSGITLQAMFGYLFAPLAWVIGI 301
           A+ GM +A  VG ++IA + ++A++N GL  +G+L G   +T+  + G LFAP+AW+IGI
Sbjct: 245 AIAGMGIAAIVGAVIIACIGLMALLNGGLGAIGELFGMPTLTVDMILGTLFAPVAWLIGI 304

Query: 302 PSHEVLAAGSYIGQKVVMNEFVAFIDFVEHKALLSEHSQVIITFALCGFANIGSIAIQLG 361
           P  E   AG+++GQK+ MNEFVAF +       LS  S  I+T ALCGFANIGS+A+  G
Sbjct: 305 PWVEASTAGAFLGQKIAMNEFVAFANM--GNVELSARSNAIMTIALCGFANIGSVAMVCG 362

Query: 362 SIGVIAPERRSEVANLGIKAVIAGTLANLMSACLAGIFI 400
           ++  + P+R   +  LG+K ++A TLANLM+A +  +FI
Sbjct: 363 ALSKMIPQRAGLIGQLGMKVLLAATLANLMNAAIVSLFI 401