Pairwise Alignments

Query, 402 a.a., NupC/NupG family nucleoside CNT transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., NupC family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  408 bits (1048), Expect = e-118
 Identities = 205/421 (48%), Positives = 301/421 (71%), Gaps = 19/421 (4%)

Query: 1   MAILFGIIGVTVLILCAYLLSESRSAINWKTISRALLLQIGFAALVLYFPLGQTALSSLS 60
           M IL  ++G+  L+  AYL SE+R AIN++T+  A LLQ+   A V+Y  LGQ+ + S++
Sbjct: 1   MQILVSLLGIITLLAVAYLASENRRAINYRTVGLAFLLQLALGAFVMYSALGQSMIFSMA 60

Query: 61  NGVSGLLGFADVGIRFLFGDLADT---------GFIFAVRVLPIIIFFSALISALYYLGV 111
             VS ++ +++ G+ F+FG L            GF+ A +VLPII+FFSAL + LYYLG+
Sbjct: 61  AAVSNVISYSNDGMSFMFGGLVSDKMYELFGAGGFVIAFKVLPIIVFFSALSAVLYYLGI 120

Query: 112 MQKVIALIGGGIQRFLGTSKAESLVATGNIFLSQGESPLLVRPFLANMTRSELFAVMAGG 171
           MQ V+  +GG +Q+ L TSKAES+ A+ NIFL   E+PLL++P++  MTRSELFAVM GG
Sbjct: 121 MQLVVKAVGGALQKLLNTSKAESMSASANIFLGVTEAPLLIKPYMPRMTRSELFAVMCGG 180

Query: 172 MASVAGSVLGGYAGLGVELKYLIAASFMAAPGSLMMAKIIVPERGVPIDQSQVELDKAQD 231
           +AS+AG++L GYA LG++++YL+AASFMAAPG L+ AK+++P+     D      ++ Q 
Sbjct: 181 LASIAGTMLAGYAQLGIKMEYLLAASFMAAPGGLLFAKLLIPQTETINDAHLQLTEENQP 240

Query: 232 SNLIDALASGAMNGMKVAVAVGTMLIAFVSVIAMVNTGLENLGDLVGFSGITLQAMFGYL 291
            NL+DA  +G M+G+ +A+AVG ML +F+S++A+ N  L  +G   G  G+TLQ + GYL
Sbjct: 241 RNLLDAATTGTMSGLSLALAVGAMLFSFISLVALFNGMLGGIGAWFGLEGLTLQQILGYL 300

Query: 292 FAPLAWVIGIPSHEVLAAGSYIGQKVVMNEFVAFID---FVEHKAL-------LSEHSQV 341
           FAPLAW++GI  +E + AGS+IGQK+V+NEF A+I+   ++   AL       +SE +QV
Sbjct: 301 FAPLAWLMGISWNEAMLAGSFIGQKIVINEFFAYINLAPYLSGDALVATTGQPMSERTQV 360

Query: 342 IITFALCGFANIGSIAIQLGSIGVIAPERRSEVANLGIKAVIAGTLANLMSACLAGIFIS 401
           I++FALCGFANIG++AI +  IG + PERR+E+A+LG+KA+ AG L+NLM+A +AG+F+S
Sbjct: 361 ILSFALCGFANIGTVAIAIAGIGGLVPERRAEIASLGLKALAAGILSNLMAATIAGLFMS 420

Query: 402 L 402
           L
Sbjct: 421 L 421