Pairwise Alignments

Query, 402 a.a., NupC/NupG family nucleoside CNT transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., NupC family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  427 bits (1097), Expect = e-124
 Identities = 219/432 (50%), Positives = 310/432 (71%), Gaps = 30/432 (6%)

Query: 1   MAILFGIIGVTVLILCAYLLSESRSAINWKTISRALLLQIGFAALVLYFPLGQTALSSLS 60
           M IL  ++GV VL+   +LLS ++ AIN +T+  AL +Q  F   VLY P+G+  L  +S
Sbjct: 1   MNILMSLVGVVVLLAIGFLLSNNKKAINLRTVGGALAIQAAFGGFVLYVPVGKDILKGMS 60

Query: 61  NGVSGLLGFADVGIRFLFGDLAD--TGFIFAVRVLPIIIFFSALISALYYLGVMQKVIAL 118
           + VS ++GFA  GI FLFGDLA+   GFIFAV VLP+I+FFS+LI+ LYYLGVMQ +I +
Sbjct: 61  DAVSSVIGFAQNGIGFLFGDLANFKLGFIFAVNVLPVIVFFSSLIAVLYYLGVMQWIIRI 120

Query: 119 IGGGIQRFLGTSKAESLVATGNIFLSQGESPLLVRPFLANMTRSELFAVMAGGMASVAGS 178
           IGGG+Q+ LGTS+ ES+ AT NIF+ Q E+PL+VRPF+  MT+SELFAVM GG+AS+AGS
Sbjct: 121 IGGGLQKALGTSRTESMSATANIFVGQTEAPLVVRPFIPTMTQSELFAVMVGGLASIAGS 180

Query: 179 VLGGYAGLGVELKYLIAASFMAAPGSLMMAKIIVPERGV-PIDQSQVELDKAQDSNLIDA 237
           VL GYA +GV +++L+AASFMAAPG L+MAK++ PE  V   D  ++  D  + +N++DA
Sbjct: 181 VLAGYAQMGVPIEFLVAASFMAAPGGLLMAKLMHPETEVAKNDMDELPEDPDKPANVLDA 240

Query: 238 LASGAMNGMKVAVAVGTMLIAFVSVIAMVNTGLENLGDLVGFSGITLQAMFGYLFAPLAW 297
            A+GA +GM +A+ VG ML+AFV +IAM+N  +  +G   G  G+TL+ + GY+F PLA+
Sbjct: 241 AAAGASSGMHLALNVGAMLLAFVGLIAMINGIIGGVGGWFGVEGLTLELILGYVFMPLAF 300

Query: 298 VIGIPSHEVLAAGSYIGQKVVMNEFVAFIDF---------------------------VE 330
           +IG+P +E L AGS+IGQK+++NEFVA+++F                            E
Sbjct: 301 LIGVPWNEALVAGSFIGQKIIVNEFVAYLNFAPYISEAATACTSVAAEVVKGSLPLCVAE 360

Query: 331 HKALLSEHSQVIITFALCGFANIGSIAIQLGSIGVIAPERRSEVANLGIKAVIAGTLANL 390
            +A+++  +Q I++FALCGFAN+ SIAI LG +G +AP RR ++A +GI+AVIAG+LANL
Sbjct: 361 TQAVMTSRTQAIVSFALCGFANLSSIAILLGGLGAMAPNRRHDLAKMGIRAVIAGSLANL 420

Query: 391 MSACLAGIFISL 402
           MSA +AG+F+++
Sbjct: 421 MSATIAGLFLAI 432