Pairwise Alignments

Query, 402 a.a., NupC/NupG family nucleoside CNT transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., NupC family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  368 bits (945), Expect = e-106
 Identities = 184/406 (45%), Positives = 279/406 (68%), Gaps = 5/406 (1%)

Query: 1   MAILFGIIGVTVLILCAYLLSESRSAINWKTISRALLLQIGFAALVLYFPLGQTALSSLS 60
           M+ +   IG+ VL+   YL SE++  I +KTI+ AL LQI   A V++ P G T + ++S
Sbjct: 1   MSTIMSCIGIAVLVFIGYLFSENKRQIKFKTIAGALALQILLGAFVMFVPAGVTIIEAMS 60

Query: 61  NGVSGLLGFADVGIRFLFGDLAD--TGFIFAVRVLPIIIFFSALISALYYLGVMQKVIAL 118
           +GV+ ++ F++ G+ F+FGDLA+   GF+F + VL ++IF SALIS LYYL VMQ +I +
Sbjct: 61  SGVNSVIAFSNSGLTFVFGDLANYKLGFVFVINVLCVVIFISALISVLYYLKVMQFIINI 120

Query: 119 IGGGIQRFLGTSKAESLVATGNIFLSQGESPLLVRPFLANMTRSELFAVMAGGMASVAGS 178
           IGGG+ + LGTSKAESL AT NIF+   E+P +VRP + NMTRSELFAVM GG+ASVAG 
Sbjct: 121 IGGGLSKVLGTSKAESLSATANIFVGPIEAPSMVRPLVKNMTRSELFAVMTGGLASVAGG 180

Query: 179 VLGGYAGLGVELKYLIAASFMAAPGSLMMAKIIVP--ERGVPIDQSQVELDKAQDSNLID 236
            + GY  LG++ KY++ A FM AP  L+ AK++ P  E  +  + +++E D  Q   L++
Sbjct: 181 TMVGYINLGIDPKYILTACFMTAPAGLLFAKLLCPQTEHNLVNNDNKIE-DADQPKGLLE 239

Query: 237 ALASGAMNGMKVAVAVGTMLIAFVSVIAMVNTGLENLGDLVGFSGITLQAMFGYLFAPLA 296
           A+  G++ GM   + V  +L++FV++IA++N  + ++G+L     +TL+ + GYL +PLA
Sbjct: 240 AITDGSLMGMNQVITVTALLVSFVAIIALLNGIIGSIGNLFSIDKLTLEMIIGYLLSPLA 299

Query: 297 WVIGIPSHEVLAAGSYIGQKVVMNEFVAFIDFVEHKALLSEHSQVIITFALCGFANIGSI 356
           +++G+P  E + A S IGQK+ +NEFVA+I F+E    LS+ +Q I+ F+LCGFANIGS+
Sbjct: 300 FLMGVPWSEAIPAASIIGQKIAINEFVAYISFLEVSNTLSDKTQAIVVFSLCGFANIGSL 359

Query: 357 AIQLGSIGVIAPERRSEVANLGIKAVIAGTLANLMSACLAGIFISL 402
           A+ +G I  + P++R  +  +G + ++A  LANLMS  +AG  +SL
Sbjct: 360 AMVVGGIAAMCPDKRELITQIGPRVLLAAILANLMSGTIAGALVSL 405