Pairwise Alignments

Query, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  226 bits (577), Expect = 2e-63
 Identities = 129/356 (36%), Positives = 207/356 (58%), Gaps = 2/356 (0%)

Query: 287 DAVAQRMMLTTLAVAAIFIFMGIFLANSIAMPINQIAKRFTDLGRGDGDLSQRIEVKGND 346
           D+    +++ +++ A   + + + L  SI  P+N+  +    +    G+L Q I   G D
Sbjct: 186 DSAITGIIIVSISAALATVVLALLLTRSIVAPLNRALEAARTIA--SGNLVQVIADDGKD 243

Query: 347 EIAQLSKGFNGFIEKIHQSIKDVAQTSRELQVAAEGVSRKALVTHDNSQQQRDQTIQVVT 406
           E  +L +        + Q+I+ +A ++ +L  AA+ +S     +    QQQ ++  Q  T
Sbjct: 244 EPGRLLQALATMQVSLRQTIEQIAGSATQLGAAAQELSAVTQESSRGLQQQHNEIEQAAT 303

Query: 407 AINQMGATISEIASNAATAAETANQASGNADQGRNVVNKAKEAISRLAHDIENTGKVVEQ 466
           A+N+M A + E+A NA + +E +NQ++  A +GR  V +  +AI  + HD++ T  ++E 
Sbjct: 304 AVNEMTAAVEEVARNAVSTSEASNQSTQAAQEGRTRVVETVDAIQTMTHDVQATASMIEG 363

Query: 467 LASTTQEIGSILDAIRGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTASS 526
           LA   ++IG +LD IR I+EQTNLLALNAAIEAARAG+ GRGFAVVADEVR LA RTA S
Sbjct: 364 LAVQGRDIGKVLDVIRAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTAQS 423

Query: 527 TEEIQKMINQLQNDAKNAVSAMDAGKTVTHQGVAASDEAVQVLMSISDRIHDISDRNTQV 586
           T+EI+KM+  +QN    AV +M      T   +  +  A   L  I+  IH I++RN  +
Sbjct: 424 TQEIEKMVAGIQNGTGQAVQSMQQSNQRTQSTLEMARAAGVALEQITQSIHQINERNLVI 483

Query: 587 ATATEEQSTVVHTINQNIEEINAINEVTTSTAEELADASKSLRELSGRLDKLVGNF 642
           A+A+EEQ+ V   +++N+  I  +   + S A++ +DA+  L  L+  L+ +V  F
Sbjct: 484 ASASEEQAQVSREVDRNLVNIRDLATQSASGAKQTSDATHELSRLAVGLNAMVARF 539



 Score = 43.5 bits (101), Expect = 2e-08
 Identities = 62/273 (22%), Positives = 110/273 (40%), Gaps = 50/273 (18%)

Query: 349 AQLSKGFNGFIEKIHQSIKDVAQTSRELQVAAEGVSRKALVTHDNSQQQRDQTIQVVTAI 408
           A+L K F+  +EK  Q+ K++   SR+ +          L TH N+        ++    
Sbjct: 112 AELYKVFSATLEKYLQAQKEMLDLSRQNKA-------DELRTHINT--------RIKEGT 156

Query: 409 NQMGATISE-IASNAATAAETANQASGNADQGRNVVNKAKEAISRLAHDIENTGKVVEQL 467
           + MG  +++ IA N A A+E++ +A  +                   +D   TG ++  +
Sbjct: 157 DLMGEQLNKLIAINVAGASESSAKAGEH-------------------YDSAITGIIIVSI 197

Query: 468 ASTTQEIGSILDAIRGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTASST 527
           ++    +   L   R I     +  LN A+EAAR    G    V+AD+ ++   R   + 
Sbjct: 198 SAALATVVLALLLTRSI-----VAPLNRALEAARTIASGNLVQVIADDGKDEPGRLLQAL 252

Query: 528 EEIQKMINQLQNDAKNAVSAMDAGKTVTHQGVAASDEAVQVLMSISDRIHDISDRNTQVA 587
             +Q  ++  Q   + A SA   G        AA+ E   V    S  +    +   Q A
Sbjct: 253 ATMQ--VSLRQTIEQIAGSATQLG--------AAAQELSAVTQESSRGLQQQHNEIEQAA 302

Query: 588 TATEEQSTVVHTINQNIEEINAINEVTTSTAEE 620
           TA  E +  V  + +N    +  +  +T  A+E
Sbjct: 303 TAVNEMTAAVEEVARNAVSTSEASNQSTQAAQE 335