Pairwise Alignments

Query, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  278 bits (711), Expect = 5e-79
 Identities = 165/466 (35%), Positives = 260/466 (55%), Gaps = 9/466 (1%)

Query: 183 MSGMSKSMDDMVRLLNSFKIEDTGFVFLTNAQGEVQIHRQKEQVKSSLQQIYGSGASALL 242
           ++G    +  +  ++NS      G  F+ +A G++ IH   ++V  +L + Y +GA  + 
Sbjct: 166 VAGADIDLSSVSAIINSLNFGGHGHAFIVSADGKILIHPDSKRVLKTLAEAYPNGAPQIS 225

Query: 243 NKSGFNLISTDYQGEEVMVASIYIESM---DWFLVGTVPVHEVFAELDAVAQRMMLT-TL 298
                 +   D  G+   ++  ++  +   DW++   +      A L       ++   +
Sbjct: 226 P----GVKEVDLDGKTQFISFTHVNGVPGADWYVALVLDKDTALAMLSEFRTSALIAMVI 281

Query: 299 AVAAIFIFMGIFLANSIAMPINQIAKRFTDLGRGDGDLSQRIEVKGNDEIAQLSKGFNGF 358
           AV  I   +G+ L   +  P+  + +   D+  G+GDL++R+ + G+DE   L   FN F
Sbjct: 282 AVVFIIALLGM-LIRVLMQPLLTMGRAMHDIAEGEGDLTRRLVIHGHDEFGALGTSFNRF 340

Query: 359 IEKIHQSIKDVAQTSRELQVAAEGVSRKALVTHDNSQQQRDQTIQVVTAINQMGATISEI 418
           +E+IH SI++VA  + ++   A  V   +  +  NS QQ  +T  V  AINQ+GA   EI
Sbjct: 341 VERIHTSIREVASATGQVNEVALRVVSASNSSMFNSDQQASRTSSVAAAINQLGAAAQEI 400

Query: 419 ASNAATAAETANQASGNADQGRNVVNKAKEAISRLAHDIENTGKVVEQLASTTQEIGSIL 478
           A NAA A++ ++ A   A+ G+ VV+K   A+ +L+  I ++   +E L S T  IG IL
Sbjct: 401 AQNAALASQHSSDARSLAEDGQQVVDKTIAAMQQLSAKISDSCGNIETLNSNTVNIGQIL 460

Query: 479 DAIRGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTASSTEEIQKMINQLQ 538
           + I  IS+QTNLLALNAAIEAARAG+ GRGFAVVADEVRNLA RT  S +++QKMI +LQ
Sbjct: 461 EVITSISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQDSAQQVQKMIEELQ 520

Query: 539 NDAKNAVSAMDAGKTVTHQGVAASDEAVQVLMSISDRIHDISDRNTQVATATEEQSTVVH 598
             A+ AV  M   +  +   V  +++A + L S++ RI +I   N  VATATEEQ+ VV 
Sbjct: 521 VGAREAVLTMTDSQRQSESSVGIANQAGERLGSVTQRIGEIDGMNQSVATATEEQTAVVE 580

Query: 599 TINQNIEEINAINEVTTSTAEELADASKSLRELSGRLDKLVGNFKL 644
           +IN +I EIN +N+      +    A   L + + RL +LVG+F++
Sbjct: 581 SINVDITEINTLNQEGVENLQATLRACADLEQQAARLKQLVGSFRI 626