Pairwise Alignments

Query, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  221 bits (562), Expect = 8e-62
 Identities = 138/369 (37%), Positives = 201/369 (54%), Gaps = 5/369 (1%)

Query: 274 VGTVPVHEVFAELDAVAQRMMLTTLAVAAIFIFMGIFLANSIAMPINQIAKRFTDLGRGD 333
           +G  P       L      + L T A AA+      +LA +   P+ Q+A++   +G  D
Sbjct: 159 LGAAPCVVAGGLLGGAGVAIALATAAAAALGAGGLAYLALA---PLQQLAEQARQVG--D 213

Query: 334 GDLSQRIEVKGNDEIAQLSKGFNGFIEKIHQSIKDVAQTSRELQVAAEGVSRKALVTHDN 393
             + Q I     DE  Q++        +    +  +   SR+L   A  +      +  +
Sbjct: 214 NPVGQLIYAGRRDEYGQIAFAMKMLETEAGAMVGRIGDASRQLSQHAHELLGAMDSSTQS 273

Query: 394 SQQQRDQTIQVVTAINQMGATISEIASNAATAAETANQASGNADQGRNVVNKAKEAISRL 453
           + +Q+ +T QV TAINQM A++ E+A+NA   AE A++A      G  VVN+   AI +L
Sbjct: 274 ASRQQSETDQVATAINQMAASVQEVANNAQRTAEAASRADSETATGTEVVNRTGAAIGQL 333

Query: 454 AHDIENTGKVVEQLASTTQEIGSILDAIRGISEQTNLLALNAAIEAARAGDQGRGFAVVA 513
           A DI+  G V+ +L + + +I  +LD IRGI+EQTNLLALNAAIEAARAG+QGRGFAVVA
Sbjct: 334 AQDIQQAGDVIHELEAHSNDITKVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVA 393

Query: 514 DEVRNLASRTASSTEEIQKMINQLQNDAKNAVSAMDAGKTVTHQGVAASDEAVQVLMSIS 573
           DEVRNLASRT  ST+EI  MI  LQ  A+ AV  M   +    Q V  + +A + L  I+
Sbjct: 394 DEVRNLASRTQQSTQEINGMIGALQGGARQAVEVMQRSREQAMQSVEHAAQAARSLHGIN 453

Query: 574 DRIHDISDRNTQVATATEEQSTVVHTINQNIEEINAINEVTTSTAEELADASKSLRELSG 633
            R+ +IS+ + Q+A A E+QS V   INQNI  I   ++   +       ++  + EL+ 
Sbjct: 454 SRVTEISEMSQQIAAAVEQQSAVSENINQNIVSIRGGSDHHVANGLRSRQSASGVAELAN 513

Query: 634 RLDKLVGNF 642
            ++ LV  F
Sbjct: 514 SMEVLVQQF 522