Pairwise Alignments

Query, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  215 bits (547), Expect = 5e-60
 Identities = 141/349 (40%), Positives = 203/349 (58%), Gaps = 18/349 (5%)

Query: 308 GIFLANSIAMPINQIAKRFTDLGRGDGDLSQRIEVKGNDE-IAQLSKGFNGFIEKIHQSI 366
           G  LA ++++P+  +   +    RG   L +  E   +D  IAQ+     G   ++  SI
Sbjct: 175 GFALAAALSVPLGLLGLSWQQ--RGTKRLLRLAEQTTSDPLIAQMYTDSRGPQARLEMSI 232

Query: 367 KDVAQTSR------ELQVAAEGVSRKALVTHDNS-------QQQRDQTIQVVTAINQMGA 413
             ++Q +R       LQ  AE ++ +A  ++  +       ++QR +T QV  AINQM A
Sbjct: 233 --LSQEARMKTCLTRLQDTAEHLNSQARQSNSLANASSIGLERQRVETEQVAAAINQMAA 290

Query: 414 TISEIASNAATAAETANQASGNADQGRNVVNKAKEAISRLAHDIENTGKVVEQLASTTQE 473
           T  E+AS+   AA+   QA+    +GR++  + +EAI RL+  +  TG  V +LA  + E
Sbjct: 291 TTQEVASHVNRAADATQQANELTRRGRDIAGETREAIQRLSTSVGETGLTVTRLAKDSDE 350

Query: 474 IGSILDAIRGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTASSTEEIQKM 533
           IG ++D I+GI++QTNLLALNAAIEAARAG+ GRGFAVVADEVR LA RTA ST +I  +
Sbjct: 351 IGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTAESTGQIHGL 410

Query: 534 INQLQNDAKNAVSAMDAGKTVTHQGVAASDEAVQVLMSISDRIHDISDRNTQVATATEEQ 593
           I +LQ  A +AV  MD G+    +GVA   EA Q L+ IS+ + +I+D  TQ+ATATEEQ
Sbjct: 411 IAKLQQTATDAVHTMDTGRRQAEEGVARVLEADQALVGISEAVANITDMTTQIATATEEQ 470

Query: 594 STVVHTINQNIEEINAINEVTTSTAEELADASKSLRELSGRLDKLVGNF 642
           S V   IN+NI  I ++ + T+  A   A  S  L + +     LV  F
Sbjct: 471 SAVAEEINRNIATIASLADQTSDEARRSAVLSGELTDTANSQYSLVERF 519