Pairwise Alignments

Query, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 706 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  219 bits (558), Expect = 3e-61
 Identities = 138/390 (35%), Positives = 218/390 (55%), Gaps = 20/390 (5%)

Query: 263 SIYIESMDWFLVGTVPVHEVFAELDAVAQRM-----------MLTTLAVAAIFIFMGIFL 311
           +I +    W L   VP     A  + V   M           +L  + +AA+ + +    
Sbjct: 314 NIPLSGSQWLLAIEVPRQIALASAEQVEGSMQAMAASLGRFVLLLGIGIAAVAVILIALF 373

Query: 312 ANSIAMPINQIAKRFTDLGRGDGDLSQRIEVKGNDEIAQLSKGFNGFIEKIHQSIKDVAQ 371
             S+  PI QI +R + L   +GDL+Q ++V  + E+  L  GFN FI K+H  I ++ +
Sbjct: 374 IRSVVAPIQQIQQRVSQLASAEGDLTQSLKVDEHAELIALGNGFNAFIGKLHGLISELKK 433

Query: 372 TSRELQVAAEGVSRKALVTHDNSQQQRDQTIQVVTAINQMGATISEIA-SNAATAAETAN 430
            + E +  ++  +R A  T  +  +Q  +   VVTA+N+M  T  E+A ++  TA+E+A 
Sbjct: 434 VATESRNESQATARIAEETKQSVNRQYSEIESVVTAVNEMSHTAHEVAKASEQTASESAA 493

Query: 431 QASGNADQGRNVVNKAKEAISRLAHDIENTGKVVEQLASTTQEIGSILDAIRGISEQTNL 490
            AS      ++ + +A   +S ++ +       V ++A ++  I  IL+ I  I+ QTNL
Sbjct: 494 MAS-QVKVSQDSLTQAVSLVSTMSKESLQAKIAVGKVAESSTNISKILEVISAIAAQTNL 552

Query: 491 LALNAAIEAARAGDQGRGFAVVADEVRNLASRTASSTEEIQKMINQLQNDAKNAVSAMDA 550
           LALNAAIEAARAG+QGRGFAVVADEVR+LAS+T +ST++I ++I+ L+ + K A   +D 
Sbjct: 553 LALNAAIEAARAGEQGRGFAVVADEVRSLASKTQASTDDISRLIDALEQEVKGASGIIDK 612

Query: 551 GKTVTHQGVAASDEAVQVLMSISDRIHDISDRNTQVATATEEQSTVVHTINQNIEEINAI 610
           G  +  Q VA +++A + L  +   I++IS++ TQ+ATA EEQS V   +++NI  I   
Sbjct: 613 GVGLAEQAVAQTEQAFEALSVMVAGINEISNQVTQIATAAEEQSAVTEEVSRNITGI--- 669

Query: 611 NEVTTSTAEELADASKSLRELSGRLDKLVG 640
               + +A EL D +   RE S  L KLVG
Sbjct: 670 ----SDSAAELMDLAGKARESSESLAKLVG 695