Pairwise Alignments

Query, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 648 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  288 bits (736), Expect = 7e-82
 Identities = 192/649 (29%), Positives = 336/649 (51%), Gaps = 15/649 (2%)

Query: 7   MFKLHQMSIKQKVVLGVTLAVLASTLIVGVMAQRQAREVLEHRLVDLELPNILKLIKSDI 66
           MF L ++ IK  V +G+  A+  S L   ++   Q  ++   +  +  LP  L    ++I
Sbjct: 2   MFNLSRLKIKTVVAVGMAGALFCSMLFSTLIYIGQFSQMFYSQTEEGLLPAQLGKASAEI 61

Query: 67  DHEVLQLLASAQQIASNEFVQQAIATTERDPATEALLVKQLNNLRDQYRLNDASVANRKT 126
           D E+ + L  ++ +ASN F+       E +      +V+ L    +Q  +  A   +  +
Sbjct: 62  DTELTKYLTLSEDLASNHFINLWQQQGEPEGG-RGDIVQFLKGYLNQQGVLAAFWISVAS 120

Query: 127 AYYWNQNGFLRELNQQ--QDGWFFGFIGSGKPTMVSM-FQEANGEVKMFANYQLVNGN-- 181
             Y+   G ++ L++Q  +D WF+ F+        ++   E  G++ ++ N  + +    
Sbjct: 121 GNYYTNEGIVKTLSRQSNRDQWFYEFLSRNNDMEAALDTDETLGKLTVYINISVRDTTGK 180

Query: 182 --TMSGMSKSMDDMVRLLNSFKIEDTGFVFLTNAQGEVQIHRQKEQVKSSLQQI--YGSG 237
              ++G+      +  ++    + ++G++F+ N  G    H+ +  +  SL Q+  Y   
Sbjct: 181 IVAVAGIGVDASKISDIVTRASMGESGYMFMLNEHGNFAAHKDRTLLNRSLSQMTDYLPV 240

Query: 238 ASALL-NKSGFNLISTDYQGEEVMVASIYIESMDWFLVGTVPVHEVFAELDAVAQRMMLT 296
            + L  N SG  ++S + +GEEV +  +Y+  M W LVG +P  E+ ++++ V    +  
Sbjct: 241 QNTLNGNASGERILSAELKGEEVYIGVVYLPKMKWNLVGIMPKAEISSQINQVIGISVGI 300

Query: 297 TLAVAAIFIFMGIFLANSIAMPINQIAKRFTDLGRGDGDLSQRIEVKGNDEIAQLSKGFN 356
           ++ +A  FI M   LA +++  I  I+ R   + R  G++ QR++   ++E+ QL+KGFN
Sbjct: 301 SVLIALFFISMSFLLAGNVSKHILAISDRLLSMSRDGGNIQQRLDDGTDNEVGQLAKGFN 360

Query: 357 GFIEKIHQSIKDVAQTSRELQVAAEGVSRKALVTHDNSQQQRDQTIQVVTAINQMGATIS 416
             + KI   + ++ Q  R +  + + ++  +  T  +++ Q+ QT QV TAINQMG TI+
Sbjct: 361 AIMGKIGNLVDEIQQGERAITASVDLLNSLSQQTVTHAEAQQQQTEQVATAINQMGQTIA 420

Query: 417 EIASNAATAAETANQASGNADQGRNVVNKAKEAISRLAHDIENTGKVVEQLASTTQEIGS 476
           E++S A   A   + A  +     NV+      + +L+  +  T   V  LA+  + I S
Sbjct: 421 EVSSVAHRIAADTSSAVSDVHNTSNVMLNLAATMEKLSASMNGTQSTVNDLATQAESINS 480

Query: 477 ILDAIRGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTASSTEEIQKMINQ 536
           +++ I  ISEQTNLLALNAAIEAARAG+ GRGFAVVADEVR LASRT  ST EI+  I +
Sbjct: 481 VVEVISSISEQTNLLALNAAIEAARAGEMGRGFAVVADEVRTLASRTQDSTSEIRTQIEK 540

Query: 537 LQNDAKNAVSAMDAGKTVTHQGVAASD--EAVQVLMSISDRIHDISDRNTQVATATEEQS 594
           LQ      ++    G       + A+D  EA   L ++ ++  DI+  N QVA ATEEQ+
Sbjct: 541 LQQAV--GLTRQAVGDAAKQSSLLATDAIEATGALKTVQEKFDDINQGNQQVAAATEEQA 598

Query: 595 TVVHTINQNIEEINAINEVTTSTAEELADASKSLRELSGRLDKLVGNFK 643
           +VV  +N++   I         +A +  D  ++L+  + R+ +LV  F+
Sbjct: 599 SVVDHVNESAHVIADTAGYINGSALQCFDEIRNLQGQADRMSRLVKQFE 647