Pairwise Alignments

Query, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  226 bits (575), Expect = 3e-63
 Identities = 141/369 (38%), Positives = 210/369 (56%), Gaps = 14/369 (3%)

Query: 286 LDAVAQRMMLTTLAVAAIFIFMGIFLAN-------SIAMPINQIAKRFTDLGRGDGDLSQ 338
           +DA++     T      +FI + + L         SI  P+ +I+   + +     DL+ 
Sbjct: 256 MDAISDAESATVTISIVVFILITLVLIGFTLAIIRSIMEPVQRISDAISRI-EATKDLTL 314

Query: 339 RIEVKGNDEIAQLSKGFNGFIEKIHQSIKDVAQTSRELQVAAEGVSRKALVTHDNSQQQR 398
           R + K +DEI Q+++ FN  +E     I++V  +   +  + + +S  ++   +   +Q 
Sbjct: 315 RCDTKVDDEIGQIARHFNSMVESFQSLIREVLTSVEVVNHSCQELSENSMRASEGVGRQL 374

Query: 399 DQTIQVVTAINQMGATISEIASNAATAAETANQASGNADQGRNVVNKAKEAISRLAHDIE 458
           ++T  V TAI +MGATI EIASN   AAE A     NA QG+  V    E I  LA  + 
Sbjct: 375 NETDMVATAITEMGATIDEIASNTELAAERAGNTHDNAQQGQVGVEHTIEKIQALAAQLT 434

Query: 459 NTGKVVEQLASTTQEIGSILDAIRGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRN 518
           ++ +VV +L   ++ IGS+LD IRGI+EQTNLLALNAAIEAARAG+QGRGFAVVADEVR+
Sbjct: 435 DSAQVVSELEKDSETIGSVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRS 494

Query: 519 LASRTASSTEEIQKMINQLQNDAKNAVSAMDAGKTVTHQGVAASDEAVQ---VLMSISDR 575
           LA RT  STEEI  +I  LQ+  ++ V  M+A      QG+ ++D+A     +L  I+  
Sbjct: 495 LAMRTQESTEEIAGIIQTLQSRTRSIVQLMEA---TQRQGIESADQAASAGALLEQINAD 551

Query: 576 IHDISDRNTQVATATEEQSTVVHTINQNIEEINAINEVTTSTAEELADASKSLRELSGRL 635
           + +I D +TQ+A A EEQS V   +N+N+  I  I   +   A+E A AS  ++  +  L
Sbjct: 552 VTNIMDMSTQIAAAIEEQSMVASEVNKNVVVIRDIAAESAQAADENAKASDDVKARTQVL 611

Query: 636 DKLVGNFKL 644
            + V  FK+
Sbjct: 612 YQAVSLFKI 620