Pairwise Alignments

Query, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 548 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  251 bits (640), Expect = 8e-71
 Identities = 170/496 (34%), Positives = 265/496 (53%), Gaps = 23/496 (4%)

Query: 167 GEVKMFANYQLVNGNTMSGMSKSMDDMVRLLNSFKIEDTGFVFLTNAQGEVQIHR-QKEQ 225
           GE  +   Y+     +MS   ++  + +  L++ + E   + +  + QG +  H   K+ 
Sbjct: 58  GEKVISQFYEASQAGSMSE-EEAKRNAIAALDALRYEGNEYFWTIDRQGIMVQHAFAKKL 116

Query: 226 VKSSLQQIYGSGASALLNKSGFNLISTDYQGEEVM-----------VASIYIESMDW-FL 273
           V +++  +       L  K      ++DY   E M             S+      W ++
Sbjct: 117 VGTNVLGMKDPNGVRLFEKMVTGTANSDYALIEYMWNRPNASAPSPKMSVVKRFTPWGWI 176

Query: 274 VGT-VPVHEVFAELDAVAQRMMLTTLAV-AAIFIFMGIFLANSIAMPINQIAKRFTDLGR 331
           VGT + V ++  E+ A   + +L  +AV   + + +G+ ++ SI+ P+      F ++ R
Sbjct: 177 VGTGIYVDDIQEEMQAFIYKYLLICIAVWLPVILILGV-ISRSISAPMADTIAAFENIAR 235

Query: 332 GDGDLSQRIEVKGNDEIAQLSKGFNGFIEKIHQSIKDVAQT---SRELQVAAEGVSRKAL 388
           G+GDL+ R+E  G DE+ Q++  FN F+ KI   +  V+ +   SREL      +S +A 
Sbjct: 236 GEGDLTLRLEESGRDELKQVAASFNEFVAKIQALVNSVSASVTHSRELAEGLADISAQAS 295

Query: 389 VTHDNSQQQRDQTIQVVTAINQMGATISEIASNAATAAETANQASGNADQGRNVVNKAKE 448
           +   N Q +   T  V TAIN+M    SE+ASNA  AA++A  A G AD    VV+ A  
Sbjct: 296 MVTANMQAE---TQSVATAINEMSMASSEVASNAQLAADSAGSADGEADDTVAVVDGAVA 352

Query: 449 AISRLAHDIENTGKVVEQLASTTQEIGSILDAIRGISEQTNLLALNAAIEAARAGDQGRG 508
            I  L++++E T    + L  ++ +IG ILD I GI+EQTNLLALNAAIEAARAG+ GRG
Sbjct: 353 KIKGLSNELEVTADEAQALQISSGKIGQILDVIVGIAEQTNLLALNAAIEAARAGEAGRG 412

Query: 509 FAVVADEVRNLASRTASSTEEIQKMINQLQNDAKNAVSAMDAGKTVTHQGVAASDEAVQV 568
           FAVVADEVR LASRT  ST+EI  +I  ++    +  +++   K  + Q V  + + V+ 
Sbjct: 413 FAVVADEVRTLASRTQESTQEINAIIEAIRASVDSVNASVARAKAQSEQTVGETSQVVEA 472

Query: 569 LMSISDRIHDISDRNTQVATATEEQSTVVHTINQNIEEINAINEVTTSTAEELADASKSL 628
           L +I   I  ISD N Q+ATATEEQS V+  +N N+  IN I+      +EE+   S+ +
Sbjct: 473 LQTIKSSIRQISDMNIQIATATEEQSAVIAELNMNVTRINDISLENQQKSEEIGSTSEQI 532

Query: 629 RELSGRLDKLVGNFKL 644
           +  S  L+ L+  FKL
Sbjct: 533 KSGSADLESLISTFKL 548