Pairwise Alignments

Query, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  246 bits (628), Expect = 2e-69
 Identities = 156/454 (34%), Positives = 244/454 (53%), Gaps = 12/454 (2%)

Query: 200 FKIEDTGFVFLTNAQGEVQIHRQKEQVKSSLQQIYGSGASALLNK---SGFNLISTDYQG 256
           F + D     L N     Q+  +  ++ S   Q+ G+    LL+K   SG    S + + 
Sbjct: 95  FLLFDADHTLLANGASPDQLGIKASKLTS---QMGGNALDKLLDKAMASGIAKASMEMRN 151

Query: 257 ------EEVMVASIYIESMDWFLVGTVPVHEVFAELDAVAQRMMLTTLAVAAIFIFMGIF 310
                 EE ++ +    +  W LV T  + +V     +V    +   L ++       + 
Sbjct: 152 PITGEQEEALMEARTFPAWQWTLVTTSYMSDVNDTTISVMYNYLGIMLLISVPIFAFFLI 211

Query: 311 LANSIAMPINQIAKRFTDLGRGDGDLSQRIEVKGNDEIAQLSKGFNGFIEKIHQSIKDVA 370
           L +SI+ P+NQ      D+  G+GDL++R+  +G DE+  L+  FN F+ KI++ + D+ 
Sbjct: 212 LNHSISSPLNQAIDAMKDIAEGEGDLTKRLPTQGKDEVVALAIAFNNFVGKINKMVADLQ 271

Query: 371 QTSRELQVAAEGVSRKALVTHDNSQQQRDQTIQVVTAINQMGATISEIASNAATAAETAN 430
               +L   A+ +      ++ +      +T  V TAINQM +T  E+AS+   AA+ AN
Sbjct: 272 PVGHDLNQDADRLFNAVAESNASVDHLHQETSSVATAINQMLSTTHEMASSTQQAADAAN 331

Query: 431 QASGNADQGRNVVNKAKEAISRLAHDIENTGKVVEQLASTTQEIGSILDAIRGISEQTNL 490
                A   +  ++   E   +L  +++N   + + L  ++++IGSILD IRGI++QTNL
Sbjct: 332 SVKQQAQDSKQQMDGTVENTHKLVQELKNAEGITQHLGVSSEQIGSILDVIRGIADQTNL 391

Query: 491 LALNAAIEAARAGDQGRGFAVVADEVRNLASRTASSTEEIQKMINQLQNDAKNAVSAMDA 550
           LALNAAIEAARAG  GRGFAVVADEVR LA+RT  ST EIQK+I  +QN   N + +   
Sbjct: 392 LALNAAIEAARAGAHGRGFAVVADEVRALANRTQDSTNEIQKIITDIQNGVANVMHSNSD 451

Query: 551 GKTVTHQGVAASDEAVQVLMSISDRIHDISDRNTQVATATEEQSTVVHTINQNIEEINAI 610
            +T + +    +    + L +I + I  ISD NTQ+A+ATEEQS V   IN+NI  I  +
Sbjct: 452 TQTQSVELQQQAQAVGESLNTILELIAHISDMNTQLASATEEQSLVTEEINRNICSITEL 511

Query: 611 NEVTTSTAEELADASKSLRELSGRLDKLVGNFKL 644
           +EV+    E    A++SLR++S    K++G FK+
Sbjct: 512 SEVSVKANESNRMAAESLRQISQTSAKILGQFKV 545