Pairwise Alignments

Query, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  254 bits (648), Expect = 9e-72
 Identities = 158/477 (33%), Positives = 256/477 (53%), Gaps = 24/477 (5%)

Query: 192 DMVRLLNSFKIEDTGFVFLTNAQGEVQIHRQKEQVKSSLQ--QIYGSGASALLN-----K 244
           D+ + L + +    G+ F+ +  G  + H  K  ++ + Q      +G   ++      +
Sbjct: 78  DVNKALRNVRFGTAGYFFIYDFDGFNRFHAVKPALEGTAQIGMTDPNGKKIVVGLIDAAR 137

Query: 245 SGFNLISTDYQ--GEEVMVASI----YIESMDWFLVGTVPVHEVFAELDAV--------- 289
           SG    + DY   G   +V  I     +   DW L       ++ A++++          
Sbjct: 138 SGDGFFNYDYSKPGVTGLVPKIGYAATVPGKDWILGTGAYTDDIDAQVESYREVMTKHMN 197

Query: 290 --AQRMMLTTLAVAAIFIFMGIFLANSIAMPINQIAKRFTDLGRGDGDLSQRIEVKGNDE 347
             A  ++L  L + AI   + +  A  +  PI+ + +   D+ +G+GDL++R++V+G+DE
Sbjct: 198 DKAMMILLFALVLVAITAVVMLVAAQRMVNPIHNMVQNLEDIAKGEGDLTKRLDVQGSDE 257

Query: 348 IAQLSKGFNGFIEKIHQSIKDVAQTSRELQVAAEGVSRKALVTHDNSQQQRDQTIQVVTA 407
           IA L + FN F++K+   IKDVA+ + E++  A+ +S +            ++T QVVTA
Sbjct: 258 IAMLGRAFNQFVDKLQGIIKDVARATVEVKSGADNISSQTAAMAQQLISHNNETDQVVTA 317

Query: 408 INQMGATISEIASNAATAAETANQASGNADQGRNVVNKAKEAISRLAHDIENTGKVVEQL 467
           I +M AT SE+A +    AE    A+ +    +  V+ +   +S L  +I+     +  L
Sbjct: 318 ITEMSATASEVAMSTTQVAEATQAATQDVGNAQECVDSSLHEVSTLMAEIDMAAGHINSL 377

Query: 468 ASTTQEIGSILDAIRGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTASST 527
              +Q+I S+L  I GI+EQTNLLALNAAIEAARAG+QGRGFAVVADEVR+LASRT +ST
Sbjct: 378 NEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQAST 437

Query: 528 EEIQKMINQLQNDAKNAVSAMDAGKTVTHQGVAASDEAVQVLMSISDRIHDISDRNTQVA 587
            EI +M+++L N    AVS+M++ +   H+ V +S      L +++  +  I+D +TQ+A
Sbjct: 438 LEINEMLSELHNLVSLAVSSMESSQQSCHRSVTSSRAISDSLGAVTSAVTSINDMSTQIA 497

Query: 588 TATEEQSTVVHTINQNIEEINAINEVTTSTAEELADASKSLRELSGRLDKLVGNFKL 644
           TA  EQS+V   IN+N+  I  I       +   +D S+ L      LD LVG FK+
Sbjct: 498 TAATEQSSVTEEINRNVFAIQEIVNELLQASNSASDTSQGLANEGRNLDTLVGQFKV 554