Pairwise Alignments

Query, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  630 bits (1625), Expect = 0.0
 Identities = 331/638 (51%), Positives = 464/638 (72%), Gaps = 3/638 (0%)

Query: 9   KLHQMSIKQKVVLGVTLAVLASTLIVGVMAQRQAREVLEHRLVDLELPNILKLIKSDIDH 68
           KL+ ++IKQK++L VT+AVL ST++VGV++QR A+EV+E R++  ELPN L+ I++ ++ 
Sbjct: 2   KLNMLTIKQKILLTVTVAVLLSTVLVGVLSQRSAKEVVEQRMLTSELPNTLQAIRNKVEM 61

Query: 69  EVLQLLASAQQIASNEFVQQAIATTERDPATEALLVKQLNNLRDQYRLNDASVANRKTAY 128
           ++  L+ +A+Q+AS++ ++Q +    R   TE L++ QL +++ QY+L  AS A+R+TA 
Sbjct: 62  DIATLMNAAEQLASSKMLKQWLVEG-RPAETEPLVIAQLKDVQQQYKLVQASYADRQTAA 120

Query: 129 YWNQNGFLRELNQQQDGWFFGFIGSGKPTMVSMFQEANGEVKMFANYQLVNGNTMSGMSK 188
           Y+ Q+GFLR L   QDGWFF +  SG   M+++F EANGEVK+F NYQ  N   + G++K
Sbjct: 121 YYTQDGFLRILTPDQDGWFFNYKNSGTERMLNVFTEANGEVKLFINYQQPNDRGLVGLAK 180

Query: 189 SMDDMVRLLNSFKIEDTGFVFLTNAQGEVQIHRQKEQV-KSSLQQIYGSGASA-LLNKSG 246
           S+DDMVRLL SFKIEDTGFV+L +A+G+V++H    Q+ K+SL  +YG   +  LLNK  
Sbjct: 181 SLDDMVRLLKSFKIEDTGFVYLVDAKGDVKLHSDTSQIGKASLSSLYGGNVTRELLNKGD 240

Query: 247 FNLISTDYQGEEVMVASIYIESMDWFLVGTVPVHEVFAELDAVAQRMMLTTLAVAAIFIF 306
           F L  T+  GE ++VAS YI SMDW+LV  VP  EVFA L+  A ++++ T+ +AA FI 
Sbjct: 241 FGLTQTELDGETLLVASSYIPSMDWYLVAQVPRAEVFALLEESAYQILVWTVLIAAAFIG 300

Query: 307 MGIFLANSIAMPINQIAKRFTDLGRGDGDLSQRIEVKGNDEIAQLSKGFNGFIEKIHQSI 366
           +  F++ S++ PI ++A    D+G+G+GDL QR+ V+GNDE+AQL+KGFN FIEKI  SI
Sbjct: 301 LSTFVSASVSQPIAKVADMLQDIGQGEGDLRQRLPVEGNDELAQLAKGFNSFIEKIQHSI 360

Query: 367 KDVAQTSRELQVAAEGVSRKALVTHDNSQQQRDQTIQVVTAINQMGATISEIASNAATAA 426
            +V  TS +L  AA+ V+ +A  T D+SQ Q+DQT+ VVTAIN+MGAT+ EIA NAA AA
Sbjct: 361 IEVTDTSVQLSHAAKDVANQAQQTQDDSQLQKDQTMMVVTAINEMGATVHEIAGNAAQAA 420

Query: 427 ETANQASGNADQGRNVVNKAKEAISRLAHDIENTGKVVEQLASTTQEIGSILDAIRGISE 486
           + A  A   +  G+ VV +A++ I++L+ D+E  G V+E LA+ T  IGSILD IR +S+
Sbjct: 421 DNAKDADNASSNGQIVVTRARDTINQLSQDVEQVGNVIESLATHTTSIGSILDVIRAVSD 480

Query: 487 QTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTASSTEEIQKMINQLQNDAKNAVS 546
           QTNLLALNAAIEAARAG+ GRGFAVVA+EVRNLASRTA+ST+E+QKMI+ LQ++A  AV 
Sbjct: 481 QTNLLALNAAIEAARAGEAGRGFAVVAEEVRNLASRTAASTDEVQKMIDNLQSEAARAVE 540

Query: 547 AMDAGKTVTHQGVAASDEAVQVLMSISDRIHDISDRNTQVATATEEQSTVVHTINQNIEE 606
           AM   K+ + +GV A DEA   L  IS +I  I+D N QVA ATEEQSTVV  IN+N+ E
Sbjct: 541 AMTQSKSRSQEGVQAVDEASHTLTEISQQIGAITDMNIQVAAATEEQSTVVEDINRNVTE 600

Query: 607 INAINEVTTSTAEELADASKSLRELSGRLDKLVGNFKL 644
           I+ I + T+ T++ +A AS+SL +L+ RLD LV  FK+
Sbjct: 601 ISEITQRTSETSQAVAQASQSLNQLAHRLDTLVAGFKV 638