Pairwise Alignments

Query, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 623 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  244 bits (624), Expect = 6e-69
 Identities = 183/652 (28%), Positives = 320/652 (49%), Gaps = 46/652 (7%)

Query: 10  LHQMSIKQKVVLGVTLAVLASTLIVGVMAQRQAREVLEHRLVDLELPNILKLIKSDIDHE 69
           ++  S+KQK+++ V   V+A +L++G+++  Q+    +  L+   L  + +L   D   E
Sbjct: 1   MNSYSLKQKILISV---VIALSLVIGLLSW-QSYSSQKSLLLQNSLEQVQRL--GDQQAE 54

Query: 70  VLQLLASAQQIASNEFVQQAIATTERDPATEALLVKQLNNLRDQYRLNDASVANRKTAYY 129
            +Q     + +A  + +  A+A+     +  AL   Q +    +++L           YY
Sbjct: 55  RIQ-----EWLAGRQDIVGALASKVEGDSLNALQQAQASG---RFQLT----------YY 96

Query: 130 WNQNGFLRELNQQQDG---------WFFGFIGSGKPTMVSMFQEANGEVKMFANYQLVNG 180
             Q G + + +   D          W+          +   + +    V +    Q V+ 
Sbjct: 97  GTQAGQMLDSDLSIDRTGYDPRTRPWYKQATNERGLILTKPYVDVAYNVLVVTMAQAVSQ 156

Query: 181 NTMSGMSKSMDDMVRLLNSFKIEDTGFVFLTNAQGEVQIHRQKEQVKSSLQQIYGSGASA 240
             + G   S+  +V  +N   +   G+  + +  G V  ++   +    +  I       
Sbjct: 157 GVVGG-DLSIASLVESVNRMTLPANGYAIMMHQDGTVIAYKDTSKAMKPVSDIDNDLNHN 215

Query: 241 LLNKSG----FNLISTDYQGEEVMVASIYIESMDWFLVGTVPVHEVFAELDAVAQRMMLT 296
           L  +S     +  +  +++  + +V  + I + DW LV  +        L+A    ++LT
Sbjct: 216 LPQQSRQAGTWLPMYFEHESRDKLVWGVDIPNTDWELVIVLDKET----LEAPLTNLLLT 271

Query: 297 TLAVAAIFIFMGI----FLANSIAMPINQIAKRFTDLGRGDGDLSQRIEVKGNDEIAQLS 352
            L ++A+ + + +    +L N +  P+ ++++    +  G+GDL+QRIEV   DE+  L+
Sbjct: 272 QLGLSAVVLLLSVLAISWLVNLLLGPLGRVSQALARIADGNGDLTQRIEVDTQDEVGVLA 331

Query: 353 KGFNGFIEKIHQSIKDVAQTSRELQVAAEGVSRKALVTHDNSQQQRDQTIQVVTAINQMG 412
             FN F+   HQ I  +   + EL   AE   +   +     Q+Q+ +   V TA+ +M 
Sbjct: 332 DSFNRFVGSQHQLISHIRHLAGELDADAEHSLKTNHLAVAELQRQQQEVAMVATAVTEMA 391

Query: 413 ATISEIASNAATAAETANQASGNADQGRNVVNKAKEAISRLAHDIENTGKVVEQLASTTQ 472
           +  +EIA+NA   A  A Q++ ++ QG+ +VNK + +I+ LA ++    +V+E L+   Q
Sbjct: 392 SATNEIAANAENTATAAQQSAASSFQGKELVNKTRSSINSLADEVTQATEVIEDLSRHAQ 451

Query: 473 EIGSILDAIRGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTASSTEEIQK 532
            I SIL  I+GI+EQTNLLALNAAIEAARAG+QGRGFAVVADEVR L+ RT  ST+E+  
Sbjct: 452 SISSILATIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSRRTQDSTQEVHA 511

Query: 533 MINQLQNDAKNAVSAMDAGKTVTHQGVAASDEAVQVLMSISDRIHDISDRNTQVATATEE 592
            I  LQ     AVS M++ + +    V  ++ AV+ L  I+  ++ ISD   Q+ATA EE
Sbjct: 512 TIETLQRTTAKAVSLMESSQMLAGNSVEDANAAVKALEEITQAVNVISDMAGQIATAAEE 571

Query: 593 QSTVVHTINQNIEEINAINEVTTSTAEELADASKSLRELSGRLDKLVGNFKL 644
           Q+ V   I QN   I  + +  T  A+     +++L+  +  L+  V  F L
Sbjct: 572 QTQVTGEITQNTVAIKDVTDEITEAAKSDLTQAQALKARANDLNAQVATFIL 623