Pairwise Alignments

Query, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  634 bits (1634), Expect = 0.0
 Identities = 336/637 (52%), Positives = 465/637 (72%), Gaps = 3/637 (0%)

Query: 10  LHQMSIKQKVVLGVTLAVLASTLIVGVMAQRQAREVLEHRLVDLELPNILKLIKSDIDHE 69
           L+ ++IKQK++L VT AVL ST++VGV++QR A+ V++ R++  E+P+++  I++ ID +
Sbjct: 7   LNNLTIKQKILLTVTFAVLLSTILVGVISQRSAKNVVQQRMLGSEMPSLMMQIRNKIDLD 66

Query: 70  VLQLLASAQQIASNEFVQQAIATTERDPATEALLVKQLNNLRDQYRLNDASVANRKTAYY 129
           +  L+ +A+Q+AS+  + Q +    R    E  +V QL ++  QY L  AS A+R+TA Y
Sbjct: 67  ISSLMNAAEQLASSRMLLQWLENG-RPQEQEPQVVAQLKDITRQYHLAQASYADRQTAAY 125

Query: 130 WNQNGFLRELNQQQDGWFFGFIGSGKPTMVSMFQEANGEVKMFANYQLVNGNTMSGMSKS 189
           + Q+GFLREL   QDGWFF +  SG+  M+++F EANGE+K+F NYQ  NG  + G++KS
Sbjct: 126 YTQDGFLRELTPAQDGWFFSYRDSGQERMLNVFTEANGEIKLFINYQQPNGRGLVGLAKS 185

Query: 190 MDDMVRLLNSFKIEDTGFVFLTNAQGEVQIHRQKEQV-KSSLQQIYGSG-ASALLNKSGF 247
           +DDMV+LL+SFKIE+TGFV+L +A+GEV++H    Q+ K+SL+ +Y +    +LLN+S F
Sbjct: 186 LDDMVQLLDSFKIEETGFVYLVDAKGEVKLHPDPSQIGKTSLKSLYSAANIGSLLNRSDF 245

Query: 248 NLISTDYQGEEVMVASIYIESMDWFLVGTVPVHEVFAELDAVAQRMMLTTLAVAAIFIFM 307
           NLI T+ QGE+  VAS YI SMDW+LV  VP  EVFA L     ++++ TL +AA FI +
Sbjct: 246 NLIDTEIQGEKTFVASSYIPSMDWYLVAQVPEAEVFALLRDAVYQILIWTLIIAAGFIML 305

Query: 308 GIFLANSIAMPINQIAKRFTDLGRGDGDLSQRIEVKGNDEIAQLSKGFNGFIEKIHQSIK 367
            I +A S++ PI Q+A  F D+G G+GDL QR+ V G DEIAQL++GFN FI KI  S+ 
Sbjct: 306 AIVVAGSVSRPIAQVAAMFRDIGEGEGDLRQRLPVNGKDEIAQLAQGFNSFISKIQDSVI 365

Query: 368 DVAQTSRELQVAAEGVSRKALVTHDNSQQQRDQTIQVVTAINQMGATISEIASNAATAAE 427
           +VAQTS +L ++A+ VS +A  T ++S +Q+D+T+ VVTAIN+MGAT++EIASNAA AA 
Sbjct: 366 EVAQTSEQLGLSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINEMGATVNEIASNAAQAAV 425

Query: 428 TANQASGNADQGRNVVNKAKEAISRLAHDIENTGKVVEQLASTTQEIGSILDAIRGISEQ 487
            A  A   ++ G+ VV +A++ I++L+HD+E  G+V+E LA+ T+ IG ILD IR ISEQ
Sbjct: 426 AAKDADTESNSGQVVVTRARDTINQLSHDVEQVGEVIESLATHTKSIGGILDVIRAISEQ 485

Query: 488 TNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTASSTEEIQKMINQLQNDAKNAVSA 547
           TNLLALNAAIEAARAG+ GRGFAVVADEVRNLASRTA+ST E+Q MI++LQ++A  AVSA
Sbjct: 486 TNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMIDKLQSEASRAVSA 545

Query: 548 MDAGKTVTHQGVAASDEAVQVLMSISDRIHDISDRNTQVATATEEQSTVVHTINQNIEEI 607
           M   +  +H+GV A DEA Q L+ IS RI  ISD N QVA ATEEQSTVV  IN+N+ EI
Sbjct: 546 MAQSRARSHEGVTAVDEASQSLVGISKRIGLISDMNIQVAAATEEQSTVVEDINRNVTEI 605

Query: 608 NAINEVTTSTAEELADASKSLRELSGRLDKLVGNFKL 644
           N I + T STA+  A AS +L +L+ RLD LV  FK+
Sbjct: 606 NDITQRTASTAQAAAQASLALNQLAHRLDTLVAKFKV 642