Pairwise Alignments

Query, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  276 bits (706), Expect = 2e-78
 Identities = 218/672 (32%), Positives = 323/672 (48%), Gaps = 75/672 (11%)

Query: 10  LHQMSIKQKVVLGVTLAVLA-STLIVGVMAQRQAREVLE------HRLVDLELPNILKLI 62
           +  ++I  ++VLG++L + A  + I+ ++    +R++ E      H+L +  + NI+   
Sbjct: 1   MKNLNISTRIVLGISLLLFAVMSFIMPLVLSEFSRQIRESEQRELHKLYETAVANIVS-- 58

Query: 63  KSDIDHEVLQLLASAQQIASNEFVQQAIATTERDPAT-----EALLVKQLN--------- 108
                  +  L++   +I SN   +   A  +R         +   V+Q           
Sbjct: 59  SGQRAQAMATLISLTPEIQSNFAERDREALLQRTQPLFMRLKQDFAVQQFQFHTPPATSF 118

Query: 109 -NLRDQYRLNDASVANRKTAYYWNQNGFLRELNQQQDGWFFGFIGSGKPTMVSMFQEANG 167
             L    +  D   A RKT    N         Q   G  +G  G G   +V M      
Sbjct: 119 LRLHRPEKFGDDLTAIRKTIVETNTQ------KQPLSGLEYGVEGLGIRGLVPM------ 166

Query: 168 EVKMFANYQLVN-GNTMSGMSKSMDDMVRLLNSFKIEDT------------GFVFLTNAQ 214
                 NYQ  + G+   GMS          N+++ E T            G  F T+  
Sbjct: 167 ------NYQGQHTGSVEFGMSFGQPFFDNFKNAYQAEITLLLPKDGNFVPFGGTFTTDTS 220

Query: 215 GEVQIHRQKEQVKSSLQQIYGSGASALLNKSGFNLISTDYQGEEVMVASIYIESMDWFLV 274
              ++++  +  +  ++ I   G S  L + G      DY G+   V  I ++       
Sbjct: 221 ASSELNKVMQGTEV-IRTIDLDGKSYALYRHGMQ----DYSGKTFGVLDIALDRS----- 270

Query: 275 GTVPVHEVFAELDAVAQRMMLTTLAVAAIFIFMGI--FLANSIAMPINQIAKRFTDLGRG 332
                H   A  D    R  L  +   A  I   I  F+A SI  PI +      D+  G
Sbjct: 271 -----HSEQAMSDI---RFKLIMIGFIAFLIGTAIAWFIAKSITRPIAETTNALNDIAEG 322

Query: 333 DGDLSQRIEVKGNDEIAQLSKGFNGFIEKIHQSIKDVAQTSRELQVAAEGVSRKALVTHD 392
           +GDL++RIEVK  DEIAQL+  FN F EKIH ++  V+ ++  L  +AE +S     T  
Sbjct: 323 EGDLTRRIEVKSKDEIAQLALAFNRFAEKIHATVAQVSDSTSLLATSAEEMSAITNETQQ 382

Query: 393 NSQQQRDQTIQVVTAINQMGATISEIASNAATAAETANQASGNADQGRNVVNKAKEAISR 452
            +++Q  +T QV TA+N+M AT+ E+A NA  AA+ A  AS + + G+ +V K    IS 
Sbjct: 383 MAKRQHLETEQVATAMNEMAATVQEVAHNATDAADAATHASESTEHGKLLVEKVISTISL 442

Query: 453 LAHDIENTGKVVEQLASTTQEIGSILDAIRGISEQTNLLALNAAIEAARAGDQGRGFAVV 512
           LA +I +  K + +L   T +I S+L  IR I++QTNLLALNAAIEAARAG+QGRGFAVV
Sbjct: 443 LADEIAHAAKAINELERNTAQIDSVLVVIRNIADQTNLLALNAAIEAARAGEQGRGFAVV 502

Query: 513 ADEVRNLASRTASSTEEIQKMINQLQNDAKNAVSAMDAGKTVTHQGVAASDEAVQVLMSI 572
           ADEVR LASRT +ST EIQ+MI  LQ+ AK+ VS M+     T   V+   EA + L +I
Sbjct: 503 ADEVRTLASRTQASTSEIQQMIEALQHSAKSTVSTMNTSTATTQNCVSLVHEAGEALEAI 562

Query: 573 SDRIHDISDRNTQVATATEEQSTVVHTINQNIEEINAINEVTTSTAEELADASKSLRELS 632
           +  +  IS  N Q+A+A  EQ  V   IN+N+  IN I    T +A + A A   L +LS
Sbjct: 563 TQAVSTISQMNIQIASAANEQCAVSAEINKNVNNINDITINATESAVQTARAGDELAQLS 622

Query: 633 GRLDKLVGNFKL 644
            RL  L+  F++
Sbjct: 623 MRLTTLLAQFRI 634