Pairwise Alignments

Query, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 623 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  245 bits (625), Expect = 5e-69
 Identities = 184/652 (28%), Positives = 319/652 (48%), Gaps = 46/652 (7%)

Query: 10  LHQMSIKQKVVLGVTLAVLASTLIVGVMAQRQAREVLEHRLVDLELPNILKLIKSDIDHE 69
           ++  S+KQK+++ V   V+A +L++ +++  Q+    +  L+   L  + +L +   +  
Sbjct: 1   MNSYSLKQKILISV---VIALSLVISLLSW-QSYSSQKSLLLQNSLEQVQRLGEQQAER- 55

Query: 70  VLQLLASAQQIASNEFVQQAIATTERDPATEALLVKQLNNLRDQYRLNDASVANRKTAYY 129
           + + LA  Q I        A+A+   D +  AL   Q +    +++L           YY
Sbjct: 56  IQEWLAGRQDIVG------ALASKVEDNSLSALQQAQASG---RFQLT----------YY 96

Query: 130 WNQNGFLRELNQQQDG---------WFFGFIGSGKPTMVSMFQEANGEVKMFANYQLVNG 180
             + G + + +   D          W+   +      +   + +    V +    Q  + 
Sbjct: 97  GTETGQMLDSDPSIDRTGYDPRTRPWYKQAMNERGLILTKPYVDVAYNVLVVTMAQATSQ 156

Query: 181 NTMSGMSKSMDDMVRLLNSFKIEDTGFVFLTNAQGEVQIHRQKEQVKSSLQQIYGSGASA 240
             + G   S+  +V  +N   +   G+  + +  G V  ++   +    + QI       
Sbjct: 157 GVVGG-DLSIASLVESVNRMTLPANGYAIMMHKDGTVIAYKDASKAMKPVGQIDNDLNHD 215

Query: 241 LLNKS---GFNL-ISTDYQGEEVMVASIYIESMDWFLVGTVPVHEVFAELDAVAQRMMLT 296
           L  +S   G  L +  + +G + +V  + I + DW LV  +        L+A    ++LT
Sbjct: 216 LPQQSRQAGTLLPMYFENEGRDKLVWGVDIPNTDWELVIVLDKET----LEAPLTDLLLT 271

Query: 297 TLAVAAIFIFMGI----FLANSIAMPINQIAKRFTDLGRGDGDLSQRIEVKGNDEIAQLS 352
              ++A+ + + +    +L N +  P+ ++++    +  G+GDL+QRIEV   DE+  L+
Sbjct: 272 QFGLSAVVLLLSVLAISWLVNLLLGPLGRVSQALARIADGNGDLTQRIEVDTQDEVGVLA 331

Query: 353 KGFNGFIEKIHQSIKDVAQTSRELQVAAEGVSRKALVTHDNSQQQRDQTIQVVTAINQMG 412
             FN F+   HQ I  + Q + EL   AE   +   +     Q+Q+ +   V TA+ +M 
Sbjct: 332 DSFNRFVGSQHQLISHIRQLASELDADAERSLKTNHIAVAELQRQQQEVAMVATAVTEMA 391

Query: 413 ATISEIASNAATAAETANQASGNADQGRNVVNKAKEAISRLAHDIENTGKVVEQLASTTQ 472
           +  +EIA+NA   A  A Q++ ++ QG+ +VNK + +I+ LA ++     V+E L+   Q
Sbjct: 392 SATNEIAANAENTATAAQQSAASSFQGKELVNKTRSSINSLADEVAQATDVIEDLSRHAQ 451

Query: 473 EIGSILDAIRGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTASSTEEIQK 532
            I SIL  I+GI+EQTNLLALNAAIEAARAG+QGRGFAVVADEVR L+ RT  ST+E+  
Sbjct: 452 SISSILATIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSRRTQDSTQEVHA 511

Query: 533 MINQLQNDAKNAVSAMDAGKTVTHQGVAASDEAVQVLMSISDRIHDISDRNTQVATATEE 592
            I  LQ     AVS M++ + +    V  ++ A + L  I+  ++ ISD   Q+ATA EE
Sbjct: 512 TIETLQRTTAKAVSLMESSQMLAGNSVEDANAAAKALEEITQAVNVISDMAGQIATAAEE 571

Query: 593 QSTVVHTINQNIEEINAINEVTTSTAEELADASKSLRELSGRLDKLVGNFKL 644
           Q+ V   I QN   I  + +  T  A+     +++L+  +  L+  V  F L
Sbjct: 572 QTQVTGEITQNTVAIKDVTDEITEAAKSDLTQAQALKARANDLNAQVATFIL 623