Pairwise Alignments

Query, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  281 bits (719), Expect = 6e-80
 Identities = 224/674 (33%), Positives = 326/674 (48%), Gaps = 79/674 (11%)

Query: 10  LHQMSIKQKVVLGVTLAVLA-STLIVGVMAQRQAREVLEHRLVDLELPNILKLIKSDIDH 68
           +  ++I  ++VLG++L + A  + I+ ++    +R++ E      EL  + +   ++I  
Sbjct: 1   MKNLNISTRIVLGISLLLFAVMSFIMPLVLSEFSRQIRESE--QRELHKLYETAVANIAS 58

Query: 69  EVLQLLASAQQIASNEFVQQAIATTERDPATEALL-----------VKQLN--------- 108
              +  A A  I+    +Q + A  + D   +  L           V+Q           
Sbjct: 59  SGQRAQAMATLISLTPEIQSSFAARDHDELLQRTLPLFTRLKQDFAVQQFQFHTPPATSF 118

Query: 109 -NLRDQYRLNDASVANRKTAYYWNQNGFLRELNQQQDGWFFGFIGSGKPTMVSMFQEANG 167
             L    +  D   A RKT    N         Q   G  +G  G G   +V M      
Sbjct: 119 LRLHRPEKFGDDLTAIRKTIVETNTQ------KQPLSGLEYGVEGLGIRGLVPM------ 166

Query: 168 EVKMFANYQLVN-GNTMSGMSKSMDDMVRLLNSFKIE-------DTGFVFL-------TN 212
                 NYQ  + G+   GMS          N+++ E       D GFV         T+
Sbjct: 167 ------NYQGQHTGSVEFGMSFGQTFFDHFKNAYQAEISLLLPKDGGFVPFGGTFTTDTS 220

Query: 213 AQGEVQIHRQKEQVKSSLQQIYGSGASALLNKSGFNLISTDYQGEEVMVASIYIESMDWF 272
           A  E++   Q ++V   ++ I  +G S  L + G      DY G+   V  I ++     
Sbjct: 221 AASELESVMQGDEV---IRTIDLNGKSFALYRHGIK----DYSGKTFGVLDIALDRS--- 270

Query: 273 LVGTVPVHEVFAELDAVAQRMMLTTLAVAAIFIFMGI--FLANSIAMPINQIAKRFTDLG 330
                  H   A  D    R+ L  + V A+ I   I  F+A SI  PI +      D+ 
Sbjct: 271 -------HSEQAMSDI---RLKLIMIGVIALLIGTAIAWFIAKSITRPIAETTDALNDIA 320

Query: 331 RGDGDLSQRIEVKGNDEIAQLSKGFNGFIEKIHQSIKDVAQTSRELQVAAEGVSRKALVT 390
            G+GDL++RIEVK  DE+AQL++ FN F EKIH ++  V+ ++  L  +AE +S     T
Sbjct: 321 EGEGDLTRRIEVKSKDEMAQLAQAFNRFAEKIHATVAQVSDSTSLLATSAEEMSAITHET 380

Query: 391 HDNSQQQRDQTIQVVTAINQMGATISEIASNAATAAETANQASGNADQGRNVVNKAKEAI 450
              + +Q  +T QV TA+N+M AT+ E+A NA  AA+ A  AS + +QG+ +V K    I
Sbjct: 381 QQMANRQHLETEQVATAMNEMAATVQEVAHNATDAADAATHASESTEQGKLLVEKVISTI 440

Query: 451 SRLAHDIENTGKVVEQLASTTQEIGSILDAIRGISEQTNLLALNAAIEAARAGDQGRGFA 510
           S LA +I      + +L   T +I S+L  IR I++QTNLLALNAAIEAARAG+QGRGFA
Sbjct: 441 SLLADEIAQAANAINELERNTTQIDSVLVVIRNIADQTNLLALNAAIEAARAGEQGRGFA 500

Query: 511 VVADEVRNLASRTASSTEEIQKMINQLQNDAKNAVSAMDAGKTVTHQGVAASDEAVQVLM 570
           VVADEVR LASRT +ST EIQ+MI  LQ  AK  VS+M+     T   V+   EA   L 
Sbjct: 501 VVADEVRTLASRTQASTTEIQQMIETLQQSAKATVSSMNTSTATTQSCVSLVHEAGSALE 560

Query: 571 SISDRIHDISDRNTQVATATEEQSTVVHTINQNIEEINAINEVTTSTAEELADASKSLRE 630
           +I+  +  IS  N Q+A+A  EQ  V   IN+N+  IN I    T +A + A A   L +
Sbjct: 561 AITQAVSTISQMNIQIASAANEQCAVSAEINKNVNNINDIATNATESAMQTARAGDELAQ 620

Query: 631 LSGRLDKLVGNFKL 644
           LS RL  L+  FK+
Sbjct: 621 LSMRLTTLLSQFKI 634