Pairwise Alignments

Query, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  261 bits (667), Expect = 6e-74
 Identities = 174/482 (36%), Positives = 265/482 (54%), Gaps = 26/482 (5%)

Query: 188 KSMDDMVRLLNSFKIEDTGFVFLTNAQGEVQIH----RQKEQVKSSLQQIYGSGASA-LL 242
           K   ++ + L   +   +G+ FL ++QG+   H      + Q K  +    G+     LL
Sbjct: 74  KEQGNVNQALRDIRFGSSGYFFLYDSQGKNLFHAVMPNLEGQNKIDMTDPRGTKIIVGLL 133

Query: 243 N--KSG-------FNLISTDYQGEEVMVASIYIESMDWFLVGTVPVHEVFAELD----AV 289
           N  K+G       F   +T+ Q E++   S+ I   DW L     + ++ A ++     V
Sbjct: 134 NAAKNGDGNFSFYFQKPNTNEQIEKIGY-SMMIPGTDWMLGTGAYIDDIDAVVEDYRTTV 192

Query: 290 AQRM-------MLTTLAVAAIFIFMGIFLANSIAMPINQIAKRFTDLGRGDGDLSQRIEV 342
            ++M       +L  L +AAI   + +  A  +  PI  +A    D+ +G+GDL++R+ V
Sbjct: 193 TEQMIDKSYAILLIALLLAAITAPVILVTAQRMVTPIKNMADNLNDIAKGEGDLTKRLAV 252

Query: 343 KGNDEIAQLSKGFNGFIEKIHQSIKDVAQTSRELQVAAEGVSRKALVTHDNSQQQRDQTI 402
           KG+DEIAQL + FN F++K+   I DVA  + +++ AA  +  +  V         ++T 
Sbjct: 253 KGDDEIAQLGRSFNLFVDKLQTIIGDVAHATAKVKTAANAIHDQTKVMSRQLISHNNETD 312

Query: 403 QVVTAINQMGATISEIASNAATAAETANQASGNADQGRNVVNKAKEAISRLAHDIENTGK 462
           QVVTAI +M AT SE+A N    AE  + A+G+    +  V+ + E IS L   I N   
Sbjct: 313 QVVTAITEMSATASEVAQNTTQVAEATHAATGDVANAQRCVDASLEEISALMAQINNAAS 372

Query: 463 VVEQLASTTQEIGSILDAIRGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASR 522
            ++ L+  +Q+I S+L  I GI+EQTNLLALNAAIEAARAG+QGRGFAVVADEVRNLASR
Sbjct: 373 NIQSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASR 432

Query: 523 TASSTEEIQKMINQLQNDAKNAVSAMDAGKTVTHQGVAASDEAVQVLMSISDRIHDISDR 582
           T SST EI +M+++L      AV  M+  +    + V +S    + L S++  +  I+D 
Sbjct: 433 TQSSTLEINEMLSELHKLVSLAVKTMEESQQSCIRSVDSSRAISESLGSVTSAVTAINDM 492

Query: 583 NTQVATATEEQSTVVHTINQNIEEINAINEVTTSTAEELADASKSLRELSGRLDKLVGNF 642
           +TQ+ATA  EQS+V   IN+N+  I  I      ++EE A  S+++ +    L KLVG F
Sbjct: 493 STQIATAATEQSSVTEEINRNVFAIQEIVNELLHSSEEAASVSQTVSQEGLNLGKLVGQF 552

Query: 643 KL 644
           K+
Sbjct: 553 KI 554