Pairwise Alignments

Query, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  641 bits (1653), Expect = 0.0
 Identities = 342/637 (53%), Positives = 466/637 (73%), Gaps = 3/637 (0%)

Query: 10  LHQMSIKQKVVLGVTLAVLASTLIVGVMAQRQAREVLEHRLVDLELPNILKLIKSDIDHE 69
           L+ ++IKQK++L VT AVL ST++VGV++QR A+ V++ R++  E+P+++  I++ I+ +
Sbjct: 3   LNNLTIKQKILLTVTFAVLLSTILVGVLSQRSAKSVVQQRMLGSEMPSLMMQIRNKIELD 62

Query: 70  VLQLLASAQQIASNEFVQQAIATTERDPATEALLVKQLNNLRDQYRLNDASVANRKTAYY 129
           +  L+ +A+Q+AS+  + Q +    R    E  +V QL ++  QY L  AS A+R+TA Y
Sbjct: 63  ISSLMNAAEQLASSRMLLQWLENG-RPQEQEPQVVAQLKDITRQYHLAQASYADRQTAAY 121

Query: 130 WNQNGFLRELNQQQDGWFFGFIGSGKPTMVSMFQEANGEVKMFANYQLVNGNTMSGMSKS 189
           + Q+GFLR L   QDGWFFG+  SG+  M+++F EANGEVK+F NYQ  NG  + G++KS
Sbjct: 122 YTQDGFLRVLTPAQDGWFFGYRDSGQERMLNVFTEANGEVKLFINYQQPNGRGLVGLAKS 181

Query: 190 MDDMVRLLNSFKIEDTGFVFLTNAQGEVQIHRQKEQV-KSSLQQIY-GSGASALLNKSGF 247
           +DDMVRLL SFKIE+TGFV+L +A+GEV++H    Q+ KSSL+ +Y G+  S+LLN+S F
Sbjct: 182 LDDMVRLLGSFKIEETGFVYLVDAKGEVKLHPDASQIGKSSLKSLYSGANISSLLNRSDF 241

Query: 248 NLISTDYQGEEVMVASIYIESMDWFLVGTVPVHEVFAELDAVAQRMMLTTLAVAAIFIFM 307
           NLI T  QGE   VAS YI SMDW+LV  VP  EVFA L   A ++++ TL +AA FI +
Sbjct: 242 NLIDTQIQGENTFVASSYIPSMDWYLVAQVPEAEVFALLTDAAYQILIWTLIIAAGFIML 301

Query: 308 GIFLANSIAMPINQIAKRFTDLGRGDGDLSQRIEVKGNDEIAQLSKGFNGFIEKIHQSIK 367
            I +A S++ PI Q+A  F D+G G+GDL QR+ VKG DEIAQL++GFN FI KI  S+ 
Sbjct: 302 AIVVAGSVSRPIAQVAAMFRDIGEGEGDLRQRLPVKGEDEIAQLAQGFNSFISKIQDSVI 361

Query: 368 DVAQTSRELQVAAEGVSRKALVTHDNSQQQRDQTIQVVTAINQMGATISEIASNAATAAE 427
           +VAQTS +L  +A+ VS +A  T ++S +Q+D+T+ VVTAIN+MGAT++EIASNAA AA 
Sbjct: 362 EVAQTSEQLGFSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINEMGATVNEIASNAAQAAV 421

Query: 428 TANQASGNADQGRNVVNKAKEAISRLAHDIENTGKVVEQLASTTQEIGSILDAIRGISEQ 487
            A  A   ++ G+ VV +A++ I++L+ D+E  G+V+E LA+ T+ IG ILD IR ISEQ
Sbjct: 422 AAKDADTESNSGQVVVTRARDTINQLSQDVEQVGEVIESLATHTKSIGGILDVIRAISEQ 481

Query: 488 TNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTASSTEEIQKMINQLQNDAKNAVSA 547
           TNLLALNAAIEAARAG+ GRGFAVVADEVRNLASRTA+ST E+Q MI++LQ++A  AV+A
Sbjct: 482 TNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMIDKLQSEASRAVNA 541

Query: 548 MDAGKTVTHQGVAASDEAVQVLMSISDRIHDISDRNTQVATATEEQSTVVHTINQNIEEI 607
           M   +  +H+GVAA DEA Q L+ ISDRI  ISD N QVA ATEEQSTVV  IN+N+ EI
Sbjct: 542 MAQSRARSHEGVAAVDEASQSLVGISDRIGLISDMNIQVAAATEEQSTVVEDINRNVTEI 601

Query: 608 NAINEVTTSTAEELADASKSLRELSGRLDKLVGNFKL 644
           N I + T STA+  A AS +L +L+ RLD LV  FK+
Sbjct: 602 NEITQRTASTAQAAAQASLALNQLAHRLDTLVAKFKV 638