Pairwise Alignments

Query, 646 a.a., VWA domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 679 a.a., TPR domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  395 bits (1015), Expect = e-114
 Identities = 247/672 (36%), Positives = 367/672 (54%), Gaps = 41/672 (6%)

Query: 3   SLIFLYPHWLGLLVPLLLLA--AWRGLRQNQ--RGLIAPHLAQALGIE--TRTRRSFGGV 56
           SL F+ P WL  L+PL+++    WR    N      IAPHLA+ L  E   ++RR    +
Sbjct: 2   SLHFIRPEWLLALLPLVIILWMLWRQHATNSAWNRYIAPHLAKVLVTEGSQKSRRPLH-I 60

Query: 57  LALSWIVATLAMAGPSWQSAERPSVQNSAARVLIMDMSRSMYATDLAPNRLTQARYKALD 116
           LA SW +ATLA+AGP+      P       RVL+MDMS SM+ATDLAPNRLTQA+++A D
Sbjct: 61  LAFSWFIATLALAGPALNKQSLPVFAAEQGRVLVMDMSVSMFATDLAPNRLTQAKFRATD 120

Query: 117 LLKGWQEGSTGLVAYAADAYVVSPLTSDSATLANLLPNLSPDIMPYQGSDAAAAVSLAIT 176
           LL+  +EG TGL+A+A DA+ +SPLT D+ TL NLLP LSP+IMP  GS+ AAA++ A  
Sbjct: 121 LLRSLKEGETGLIAFAGDAFTISPLTRDTGTLLNLLPTLSPEIMPVLGSNLAAALTQAKN 180

Query: 177 MLQQSGHQQGDLILITDDMSVTEREKLISLLQGSPWRLVTLAIGTPSGAPIPLGDGSLLK 236
           +L Q GH +GD+I++TD ++  + ++  S+L GS +RL  +  G+  GAPI L DG L +
Sbjct: 181 LLAQGGHLRGDIIVMTDGITPRQFDEANSVLTGSQYRLAIMGFGSNQGAPIRLPDGQLQR 240

Query: 237 DRQGQTVIAKTAFDQLQQLSQSVQGVLTAYRADGADVAHILSLTQQPIDIAESTSRQAIT 296
           D   +  +AKT F  LQ+L+ +  G++   RADG D+  +        D A++T     T
Sbjct: 241 DSSNEVAVAKTDFGLLQKLADNHNGIMIPNRADGEDLVQLQHWLSDSGD-AKATDLDGET 299

Query: 297 ERVNNGYWLVLPLLIAALCLFRRGVIFSLLLLFGVSL--------PNQQAWASAWLNQDQ 348
            + + G +L L LLI AL  FR+G++ S +L+   SL         +  AW S W  Q+Q
Sbjct: 300 WQ-DLGPYLALFLLIPALLSFRQGMLASWMLMGFASLLLGALPQNAHANAWNSLWHTQEQ 358

Query: 349 QAMRMFNNEQYAQAAEAFRDPRWQGAARYYAKDYQGAIDAYSQIANPDTATQYNLANAYA 408
           QAM+ +  E YA AA+ F  P+WQGAA+Y A +++ A+ ++ Q  +      YN  NA  
Sbjct: 359 QAMQAYQAEDYASAAQKFETPQWQGAAQYKAGNFEQALKSFEQ--DNSANGLYNQGNALM 416

Query: 409 QAGELQKAQDLYEHVLKQEPNHQDARHNLDVVKAAQQQQQQQQQQQQQQQQQQQQQQQQQ 468
           Q G+  KA++ Y+  L ++P+   A+ NL++ +   +QQQ QQ    Q +  Q  Q QQ 
Sbjct: 417 QMGKPDKAKERYQAALDKQPDFPQAKANLELAEKLLEQQQSQQNANNQDKPSQGDQNQQG 476

Query: 469 QQQQQQQQQQQQQQQQQQQQQDSSSGASGQE------------AQEDSSANPSNTAQEQ- 515
           Q Q  QQQ Q QQQ QQ++QQ S +  S ++            + +D   NP   AQ+Q 
Sbjct: 477 QDQNDQQQGQNQQQGQQKEQQSSPNDPSQEQQAGEKQTQDNTSSAKDKQDNPEQEAQDQQ 536

Query: 516 ----EASSQTKGASTPDPQQDLQESTEPKANAKP-QEQPNAVDDAQAGEPSAHREQSKDS 570
               +A+ Q   A     Q   QE++E  A   P  E      +    +     ++SK  
Sbjct: 537 QASDDAAKQDANAGNQQQQSQQQEASEQNAQNNPTAESSEPASNESKMQAKVEDDKSKAK 596

Query: 571 QNGQPSGTEQNDEQSDKANAAQPSTSVTTSSDP--NLDPMLRKLEQV--ESARDPSALLR 626
           Q  Q +  +  D++        P  +V +   P  N DP+   +++     + DP  LLR
Sbjct: 597 QEQQQAVAQHADKEKQSPTEKDPQAAVESLEPPPSNSDPLPADMQRALRGVSEDPQVLLR 656

Query: 627 AQFILQAQRKPQ 638
            +  L+ Q++ Q
Sbjct: 657 NKMQLEYQKRRQ 668