Pairwise Alignments

Query, 411 a.a., transposase from Vibrio cholerae E7946 ATCC 55056

Subject, 414 a.a., tryptophan-specific transport protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  323 bits (829), Expect = 4e-93
 Identities = 177/403 (43%), Positives = 248/403 (61%), Gaps = 7/403 (1%)

Query: 13  SLFGGACIIASVCVGAGMLGLPSAGAGAWTLWSMLALALTMAVMTLSGWMLLEAFKHYDL 72
           SL GGA IIA   VGAGM  LP  G+G W  +S+L L      M +SG +LLE   H++ 
Sbjct: 12  SLLGGAMIIAGTTVGAGMFSLPVVGSGMWFGYSILMLLGIWFCMLMSGLLLLETNLHFEP 71

Query: 73  RVSFNTVTKDMLGSHINRFNNLTVYFVGGILLYAYITSSGLILQDLLH-----INSKIAS 127
             SF+T+TK+ LG      N +++ FV  IL YAYI+  G I+   L      +   +A 
Sbjct: 72  GASFDTLTKETLGQFWRIVNGVSIAFVLYILTYAYISGGGSIVNHSLQGMGIELPQSVAG 131

Query: 128 ILFVAVFSAFVWHSTRAVDRISVILIVFMVLSFIFGVSGLAINVKTSILFDTLNQSGEYA 187
           ++F  V +  V  ST+AVDRI+ I++  M+++F   +  L I +  + L +  + +  + 
Sbjct: 132 LVFTVVLACIVLISTKAVDRITTIMLGGMIITFFLAIGNLLIEIDVTKLLEP-DGNQRFI 190

Query: 188 PYAMAMLPVALTSFGYHHSVSSMRAYYGEERKAKY-AILGGTVIALSLYALWLFSIFGNL 246
           PY    LP  L SFGYH +V S+  YYG++      AI  GT IAL +Y  WL +  GN+
Sbjct: 191 PYLWVALPFGLASFGYHGNVPSLVKYYGKDSSTIIKAIFVGTFIALIIYVCWLVATMGNI 250

Query: 247 PRADFAPVIQQGGNVDVLLKALGSVVESEKVSQAINAFSMAAILSSFIGVGLGVFDFLAD 306
           PR+ F+ +I QGGN+ VL+ AL  V+ES  ++  +  F+  A+ SSF+GV LG+FD+LAD
Sbjct: 251 PRSQFSEIIAQGGNMGVLVGALSKVMESSWLNSMLTLFANLAVASSFLGVTLGLFDYLAD 310

Query: 307 LFQFSNCKQGRTKTWLVTFLPPLILSLLFPFGFIIAIGYAGAAATIWACIIPVLLARKSR 366
           LF F + + GR KT +VTF+PP +  LLFP GF+IAIG+A  AAT+WA I+P L+A KSR
Sbjct: 311 LFGFDDSRSGRMKTAIVTFVPPTVFGLLFPDGFLIAIGFAALAATVWAVIVPALMAYKSR 370

Query: 367 TLANGAQGFVVPGGNLALGLVLIFGVLTAVFHMMAMANLLPAF 409
            L    QGF V GG   + LV++FGV+T   H++AMANLLP F
Sbjct: 371 QLFPNHQGFRVFGGTPLIILVVLFGVVTGACHLLAMANLLPQF 413