Pairwise Alignments

Query, 411 a.a., transposase from Vibrio cholerae E7946 ATCC 55056

Subject, 395 a.a., tyrosine-specific transport protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  171 bits (432), Expect = 5e-47
 Identities = 123/392 (31%), Positives = 197/392 (50%), Gaps = 18/392 (4%)

Query: 11  QPSLFGGACIIASVCVGAGMLGLPSAGAGAWTLWSMLALALTMAVMTLSGWMLLEAFKHY 70
           Q   FG   +IA   +GAGML LP A AG     S + + +  A+M  +  +++E  +  
Sbjct: 3   QNKFFGSLLLIAGTTIGAGMLALPIASAGLGFGMSSMIMLIFWALMAYTALLMVEIHQFA 62

Query: 71  DLRVSFNTVTKDMLGSHINRFNNLTVYFVGGILLYAYITSSG-LILQDL-----LHINSK 124
               S N + + +LG+       + + F+   L  AYI   G  + Q L     L +  +
Sbjct: 63  PSDASLNQLARHLLGTKGQVVACIALMFLLYALCAAYIAGGGEQVHQKLTSWLGLALPPQ 122

Query: 125 IASILFVAVFSAFVWHSTRAVDRISVILIVFMVLSFIFGVSGLAINVKTSILFDTLNQSG 184
             +ILF  +    V   T  VD I+ +L    +++ I  ++ L   V+ + L +   + G
Sbjct: 123 AGAILFTLLIGTIVGLGTHCVDLINRVLFSLKIIALILMLALLLPQVEGTHLLELPLEQG 182

Query: 185 EYAPYAMAMLPVALTSFGYHHSVSSMRAYYGEERKA-KYAILGGTVIALSLYALWLFSIF 243
                 ++ +PV  TSFG+H S+ S+  Y G E KA +  +L G+ + L +Y LW     
Sbjct: 183 ----LIVSAIPVIFTSFGFHGSIPSVVRYLGIEVKALRKIMLLGSALPLLIYLLWQLGSQ 238

Query: 244 GNLPRADFAPVIQQGGNVDVLLKALGSVVESEKVSQAINAFSMAAILSSFIGVGLGVFDF 303
           G L ++     +    ++   +  L SV+ S+ +S AI+ F+  A+ +SF+GV LG+FDF
Sbjct: 239 GVLSQSQ----LMTNQSLSGFISQLASVLHSQYLSSAISVFADLALATSFLGVSLGLFDF 294

Query: 304 LADLFQFSNCKQGRTKTWLVTFLPPLILSLLFPFGFIIAIGYAGAAATIWACIIPVLLA- 362
           +A   +  +   GR+ T  +TF+PPL  +L +P GFI A+GYA  A  I A  +PV +  
Sbjct: 295 IAANLRQEDNATGRSVTAAITFVPPLGFALFYPQGFITALGYAAIALVILAIFLPVSMVW 354

Query: 363 --RKSRTLANGAQGFVVPGGNLALGLVLIFGV 392
             RK R  A   QG+ V GG L L L L+ G+
Sbjct: 355 VQRKQRDKAKLPQGYRVAGGTLGLVLALLCGL 386