Pairwise Alignments

Query, 313 a.a., universal stress protein from Vibrio cholerae E7946 ATCC 55056

Subject, 310 a.a., universal stress protein family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 99.4 bits (246), Expect = 1e-25
 Identities = 79/323 (24%), Positives = 157/323 (48%), Gaps = 27/323 (8%)

Query: 1   MKKFKNILFATQGLPGHSDALEQAIQLAYNNRGQLAGLIAFPAFPADL-----QRYQEPY 55
           MK ++ IL        +  AL +A+ LA  +   +   ++   F  ++      + +E  
Sbjct: 1   MKDYQKILVVVDPTTENQVALARAVTLASKSNAHVTVFLSIFDFSYEMTSILSSQEREAM 60

Query: 56  EQSYLNTLMETVEACRSQHHIHKDEVPFPLMVEHSEQPAVAIIKSALNHHIDLLIKEAEP 115
            Q  ++  +  ++   + ++ H        ++ H+ +P  +II  A+    DL++K    
Sbjct: 61  RQGVIDQRVAWIQDLLAPYN-HLGLNIDTQVIWHN-RPFESIINHAIAGQYDLIVKG--- 115

Query: 116 MTHSQQGFKAL-----DMTLLRKCPCPVWLHRPLAKPKANRRVAVAIDPITTTEQQKALA 170
            TH+    KA+     D  L+RK P PV + +    P+  + +  A++  T     + L 
Sbjct: 116 -THAHDKLKAVIFTPTDWHLMRKAPVPVLMVKDHDWPETGK-ILCAVNVATEDTDHQMLN 173

Query: 171 LRLLELSRSIANTCDSRLHIVSCWEYYLENYLHDQVWIQVEQQQIAEEIAQAKIR--HEQ 228
            +++E ++ +A    + +H+V+        +    V + +E      +     IR  HEQ
Sbjct: 174 GKIIEHAKDLAGKFAAEVHLVN-------GFPGTPVNLAIELPDFDAQTYNDTIRLQHEQ 226

Query: 229 ALRQLIDESGITGELVIHHLHGKPDELIPEWVTQENIDILVMGTLARTGIAGFVIGNTAE 288
            ++ L D  GI  +   H   G P+++IPE   Q + +++++GT+ RTG +  +IGNTAE
Sbjct: 227 RVQYLADAYGIDKQNC-HVKEGLPEDVIPELAEQLDAELVILGTVGRTGFSAALIGNTAE 285

Query: 289 NIVQSIECSLVALKPEGFVSPIK 311
           +++ SI C L+A+KP+G+ SP++
Sbjct: 286 HVIDSINCDLLAIKPDGYKSPLE 308