Pairwise Alignments

Query, 313 a.a., universal stress protein from Vibrio cholerae E7946 ATCC 55056

Subject, 310 a.a., universal stress protein UspE (RefSeq) from Shewanella sp. ANA-3

 Score =  107 bits (266), Expect = 5e-28
 Identities = 83/324 (25%), Positives = 156/324 (48%), Gaps = 29/324 (8%)

Query: 1   MKKFKNILFATQGLPGHSDALEQAIQLAYNNRGQLAGLIAFPAFPADL-----QRYQEPY 55
           MK ++ IL        H  AL +A+ LA  +   +   ++   F  ++      + +E  
Sbjct: 1   MKDYQKILVVVDPTTEHQVALARAVTLASKSNAHVTVFLSIFDFSYEMTSILSSQEREAM 60

Query: 56  EQSYLNTLMETVE-ACRSQHHIHKDEVPFPLMVEHSEQPAVAIIKSALNHHIDLLIKEAE 114
            Q  ++  +  ++    + +H+  D       V    +P  +II  A+    DL++K   
Sbjct: 61  RQGVIDQRLAWIQDLLTAYNHLQLD---IDTQVIWHNRPFESIINHAIAGQYDLIVKG-- 115

Query: 115 PMTHSQQGFKAL-----DMTLLRKCPCPVWLHRPLAKPKANRRVAVAIDPITTTEQQKAL 169
             TH+    KA+     D  L+RK P PV + +    P+A + +  A++  T     + L
Sbjct: 116 --THAHDKLKAVIFTPTDWHLMRKAPVPVLMVKDHDWPEAGK-ILCAVNVATEDTDHQML 172

Query: 170 ALRLLELSRSIANTCDSRLHIVSCWEYYLENYLHDQVWIQVEQQQIAEEIAQAKIR--HE 227
             +++E ++ +A    + +H+V+        Y    V + +E      +     IR  HE
Sbjct: 173 NGKIIEHAKDLAAKFAAEVHLVN-------GYPGTPVNLAIELPDFDAQTYNDTIRMQHE 225

Query: 228 QALRQLIDESGITGELVIHHLHGKPDELIPEWVTQENIDILVMGTLARTGIAGFVIGNTA 287
           Q ++ L +  GI   L  H   G P+++IPE   Q + +++++GT+ RTG +  +IGNTA
Sbjct: 226 QRVQYLANAYGID-TLHCHVKEGLPEDVIPELAEQLDAELVILGTVGRTGFSAALIGNTA 284

Query: 288 ENIVQSIECSLVALKPEGFVSPIK 311
           E+++ SI C L+A+KP+G+ SP++
Sbjct: 285 EHVIDSINCDLLAIKPDGYKSPLE 308