Pairwise Alignments

Query, 891 a.a., proton-conducting membrane transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 665 a.a., NAD(P)H-quinone oxidoreductase subunit F from Synechococcus elongatus PCC 7942

 Score =  202 bits (515), Expect = 4e-56
 Identities = 140/492 (28%), Positives = 237/492 (48%), Gaps = 45/492 (9%)

Query: 49  WVPGLDLNLS--FRLDGLSFLFASLITGIGALIQIYALAYMKEKAARFSFHLYLTLFMLA 106
           W    D +LS  + +D L+ +  +++T +  L+ +Y   YM        F+ YL+LF  +
Sbjct: 75  WASAGDFHLSMGYTIDPLTTVMLTVVTTVALLVMLYTDGYMAHDRGYVRFYAYLSLFSSS 134

Query: 107 MLGVVVSDNILLLFIFWELTTITSYLLIGFNHDKPVSRKNALQSLLVTGAGGLALLAGLI 166
           MLG+V+S N++ ++IFWEL  + SYLL+GF +D+  +     ++ +    G   LL G++
Sbjct: 135 MLGLVISPNLVQIYIFWELVGMCSYLLVGFWYDRKAAADACQKAFVTNRVGDFGLLLGML 194

Query: 167 LLGLMANSYQISVIIEHADHIAQHPWFMPSL-----ILVLLGAFTKSAQFPFHFWLPNAM 221
            L     S++ + I +    +         L     ILV LG   KSAQFP H WLP+AM
Sbjct: 195 GLYWATGSFEFTEIGDRLQSLISSGALSAGLATLFGILVFLGPVAKSAQFPLHVWLPDAM 254

Query: 222 AAPTPVSAYLHSATMVKAGIYLLARLSPIYASSDFWFYCLTIVGAVTALWCALLAFKQTD 281
             PTP+SA +H+ATMV AG++L+AR+ P++         +   GA TA   A +A  Q D
Sbjct: 255 EGPTPISALIHAATMVAAGVFLIARMYPVFEQLPTVMDVIAWTGAFTAFLGASIALTQND 314

Query: 282 LKLMLAYSTNVALGKLTLLLGLGTEVALTAAVLFIFAHSFYKAALFM----VVGNIDKAT 337
           +K  LAYST   LG + + +G+G   A +A +  +  H+++KA LF+    V+  ++   
Sbjct: 315 IKKGLAYSTISQLGYMVMAMGVG---AYSAGLFHLVTHAYFKAMLFLGSGSVIHGMEAVV 371

Query: 338 G-----TREREKLGNLKSVLLLSLIAAVIAALSKSGVAPMLGFLSKEYMYKSSVESG-IA 391
           G      ++   +G L+  + ++ I  +I  L+ +G+ P  GF SK+ +  ++  +  I 
Sbjct: 372 GHNPVLAQDMRLMGGLRKYMPVTAITFLIGNLAIAGIPPFAGFWSKDEILGATFAANPIL 431

Query: 392 W-ISLVLLLINALMVALAIALLYKPFF-------------------GQATKESESHPPKA 431
           W +      + A  +     L ++  F                   G    E   H P  
Sbjct: 432 WGVGFATAGLTAFYMFRIYFLTFEGSFRGEDATIQAKLLAEAGVTAGHGHDEHHDHVPH- 490

Query: 432 IEQKKSLWLPAMGLAIASFLLPVFALDWINQ---HLVIPAVMAMDPNSVPQAAKLWQGFN 488
            E   ++ LP   LA+ S L+ +  + W N+    +  P       +   Q      G +
Sbjct: 491 -ESPWTMALPLAILAVPSALIGLLGMPWNNRFEAFVKAPGEAVHAGHFELQEFLTLGGAS 549

Query: 489 IPLALSGITLVL 500
           + +AL+GIT+ L
Sbjct: 550 VAIALTGITIAL 561