Pairwise Alignments

Query, 891 a.a., proton-conducting membrane transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 490 a.a., NADH dehydrogenase (quinone) (NCBI) from Rhodospirillum rubrum S1H

 Score =  160 bits (404), Expect = 2e-43
 Identities = 129/412 (31%), Positives = 203/412 (49%), Gaps = 25/412 (6%)

Query: 57  LSFRLDGLSFLFASLITGIGALIQIYALAYMK--EKAARFSFHLYLTLFMLAMLGVVVSD 114
           L F LD L  LFA +   +     +Y++AY++   +A +  FH Y  L +   LG+ ++ 
Sbjct: 74  LVFTLDPLGLLFALVAAALWIPAGLYSIAYLRANHEAHQPRFHAYFALAIACTLGIALAG 133

Query: 115 NILLLFIFWELTTITSYLLIGFNHDKPVSRKNAL-QSLLVTGAGGLALLAGLILLGLMAN 173
           N+  LF+F+E  T+++Y LI         R   +   +L+  + GL L+A ++   L   
Sbjct: 134 NLFTLFLFYEALTLSTYPLITHQGTAQAVRAGRIYMGMLLVPSIGLLLVAIILTHSLAGR 193

Query: 174 -SYQISVIIEHADHIAQHPWFMPSLILVLLGAFTKSAQFPFHFWLPNAMAAPTPVSAYLH 232
             +Q   I+  A  I   P     L L + G   K+A  PFH WLP AM APTPVSA LH
Sbjct: 194 MDFQPGGIL--AGRI-DGPLVGLLLALFVFGT-AKAALMPFHRWLPAAMVAPTPVSALLH 249

Query: 233 SATMVKAGIYLLAR-------LSPIYASSDFWFYCLTIVGAVTALWCALLAFKQTDLKLM 285
           +  +VKAG++ +A+       +  + ASS  W   LT V  ++ +  +L+A +Q +LK  
Sbjct: 250 AVAVVKAGVFTIAKVVISIFGIDLLAASS--WTGWLTWVAGISVILASLIALRQDNLKRR 307

Query: 286 LAYSTNVALGKLTLLLGLGTEVALTAAVLFIFAHSFYKAALFMVVGNIDKATGTREREKL 345
           LAYST   L  + + L L + + + AA L I  H+F K  LF   G I  AT      + 
Sbjct: 308 LAYSTISQLAYVVMALSLFSPLGVLAAGLHIVVHAFGKITLFFAAGAIHTATHKDSVSQF 367

Query: 346 GNLKSVLLLSLIAAVIAALSKSGVAPMLGFLSKEYMYKSSVESGIAWISLVLLLINALMV 405
             +   +  ++ A  +A+LS  G+ P  GFLSK  ++ ++ +     +  VL+    L  
Sbjct: 368 AGIGRAMPWTMGAFAVASLSMIGLPPTAGFLSKWGIFSAAFQGQTWGVVAVLIASTVLNA 427

Query: 406 ALAIALLY----KPFFGQATKESESHPPKAIEQKKSLWLPAMGLAIASFLLP 453
           A  + +L+    KP  G+A  +    PP  +    +L L A G  +A F LP
Sbjct: 428 AYFLPILHTAFLKPPPGEAGAKIAEAPPLMV---AALCLTAFG-TLALFFLP 475