Pairwise Alignments

Query, 891 a.a., proton-conducting membrane transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 643 a.a., NADH-plastoquinone oxidoreductase, chain 5 (NCBI) from Rhodospirillum rubrum S1H

 Score =  212 bits (540), Expect = 5e-59
 Identities = 141/438 (32%), Positives = 231/438 (52%), Gaps = 21/438 (4%)

Query: 30  LFGW-VFYWHQTGGNAWQVT---WVPGLDLNLSF--RLDGLSFLFASLITGIGALIQIYA 83
           LF W +F+    GGN   VT   WV   DL+  +  ++D LS +   ++T I  ++ IY+
Sbjct: 42  LFSWFIFFDTALGGNNTTVTLFTWVISGDLHFDWALKIDTLSAVMLMVVTTISFMVHIYS 101

Query: 84  LAYMKEKAARFSFHLYLTLFMLAMLGVVVSDNILLLFIFWELTTITSYLLIGFNHDKPVS 143
           + YM   A+   F  YL+LF   ML +V +DN++ +F  WE   + SYLLIGF ++KP +
Sbjct: 102 VGYMHHDASVPRFMAYLSLFTFFMLMLVTADNLVQMFFGWEGVGLASYLLIGFWYEKPSA 161

Query: 144 RKNALQSLLVTGAGGLALLAGLILLGLMANSYQISVII----EHADHIAQH---PWFMPS 196
              A+++ +V   G      G+  +  +  +  +  I     +HA+ +       W   +
Sbjct: 162 NAAAIKAFVVNRVGDFGFTLGIFGVFFVFGTVGLDAIFAGAAQHANDVVTFFGIEWHAMT 221

Query: 197 LILVLL--GAFTKSAQFPFHFWLPNAMAAPTPVSAYLHSATMVKAGIYLLARLSPIYASS 254
           ++ +LL  GA  KSAQ   H WLP+AM  PTPVSA +H+ATMV AG++++AR+SP++  S
Sbjct: 222 ILCLLLFIGAMGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFMVARMSPLFVLS 281

Query: 255 DFWFYCLTIVGAVTALWCALLAFKQTDLKLMLAYSTNVALGKLTLLLGLGTEVALTAAVL 314
           D     +TIVGA TA++ A +   Q D+K ++AYST   LG +   LG+G   A  A + 
Sbjct: 282 DTAMTVVTIVGASTAIFAATVGCVQNDIKRVIAYSTCSQLGYMFFALGVG---AFGAGIF 338

Query: 315 FIFAHSFYKAALFMVVGNIDKA-TGTREREKLGNLKSVLLLSLIAAVIAALSKSGVAPML 373
            +  H+F+KA LF+  G++  A +  ++  ++G +  ++ L+     I +L+  GV P  
Sbjct: 339 HLMTHAFFKALLFLGAGSVIHAMSDEQDMRRMGGIWRMVPLTYALMWIGSLALMGVPPFA 398

Query: 374 GFLSKEYMYK--SSVESGIAWISLVLLLINALMVALAIALLYKPFFGQATKESESHPPKA 431
           GF SK+ + +   +   G    +  L ++ A + A     L    F  A +  E      
Sbjct: 399 GFFSKDMILEVAYAAHGGAGAYAFWLGILAATLTAFYSTRLIIMTFHGAPRADEHVMAHV 458

Query: 432 IEQKKSLWLPAMGLAIAS 449
            E  + + LP + LAI +
Sbjct: 459 HESPRVMTLPLIVLAIGA 476