Pairwise Alignments

Query, 891 a.a., proton-conducting membrane transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 1265 a.a., NADH dehydrogenase (quinone) (NCBI) from Rhodospirillum rubrum S1H

 Score =  150 bits (379), Expect = 5e-40
 Identities = 110/380 (28%), Positives = 191/380 (50%), Gaps = 24/380 (6%)

Query: 64  LSFLFASLITGIGALIQIYALAYMKEKAARFSFHLYLTLFMLAMLGVVVSDNILLLFIFW 123
           L  LFA +   IG  + +Y++ YMK       +  +L L + +++GV  ++++   ++FW
Sbjct: 278 LGGLFALIFAAIGLAVTVYSVGYMKHGHGVNRYFFFLFLMIGSLIGVATTNHLGNFYLFW 337

Query: 124 ELTTITSYLLIGFNHDKPVSRKNALQSLLVTGAGGLALLAGLILLGLMANSYQISVIIEH 183
           EL T  SYLL+  +     + K  ++  L+  +G   +  G+++L     +++IS I   
Sbjct: 338 ELMTWMSYLLV-IHEQTAKALKAGMKYFLICASGAYVMHFGILVLHAQLGTFEISEI--- 393

Query: 184 ADHIAQHPWFMPSLILV--LLGAFTKSAQFPFHFWLPNAM-AAPTPVSAYLHSATMVKAG 240
           A  I      +  ++L   L+G   K+  FP + WLP A   AP+ +S  + S  + KAG
Sbjct: 394 APCIGTLSPALAGVVLATFLIGFMAKAGLFPLYSWLPEAHPVAPSSISGPM-SGILTKAG 452

Query: 241 IY----LLARLSPIYASSDFWFYC--------LTIVGAVTALWCALLAFKQTDLKLMLAY 288
           I     LL  +  + A   F  +         L  +G +T L   + A++QTD+K +LAY
Sbjct: 453 ILGMVKLLFGIFGVGALGQFGLFAGLSLPGAVLVALGGITLLLGEVQAYRQTDIKRLLAY 512

Query: 289 STNVALGKLTLLLGLGTEVALTAAVLFIFAHSFYKAALFMVVGNIDKATGTREREKLGNL 348
           ST   +G++T++LG+GT +AL   +  +  H+  K  LF  VG +   +  R  + L  L
Sbjct: 513 STLAQIGEITMVLGVGTSLALAGGLFHVTNHAVMKTMLFFAVGALILRSAGRSLDDLKGL 572

Query: 349 KSVLLLSLIAAVIAALSKSGVAPMLGFLSKEYMYKSSVESGIAWISLVLL---LINALMV 405
             V+  + +   I  L+  GV P  GF+SK  M  + VE+G   ++ V+L   +I AL  
Sbjct: 573 GKVMPFTGLCLGIGLLAIMGVPPFGGFVSKFLMIYACVEAGQVGVAAVILVGSVIGALYY 632

Query: 406 ALAI-ALLYKPFFGQATKES 424
           A  + A+ ++P+ G    E+
Sbjct: 633 ARVLRAVFFEPYTGPKVVEA 652



 Score =  145 bits (367), Expect = 1e-38
 Identities = 121/469 (25%), Positives = 211/469 (44%), Gaps = 31/469 (6%)

Query: 58   SFRLDGLSFLFASLITGIGALIQIYALAYMKEKAARFSFHLYLTLFMLAMLGVVVSDNIL 117
            S R D LSF FA+LI  +GA+  +Y++ YM    A+  F  +  + +  +LGV  SD++ 
Sbjct: 750  SGRYDLLSFWFAALIVVVGAINLLYSIGYMAHGHAQNRFFFFFVMMIGGLLGVTASDDLF 809

Query: 118  LLFIFWELTTITSYLLIGFNHDKPVSRKNALQSLLVTGAGGLALLAGLILLGLMANSYQI 177
              F FWE+ +  +  L+  + +   S     +  +    G   L  G+ +L   A ++++
Sbjct: 810  NFFAFWEVMSSWTLYLVIIHEETKDSLDEGTKYFIFNFVGASFLFLGVAILAAKAGTFEM 869

Query: 178  SVIIEHADHIAQHPWFMPSLILVLLGAFTKSAQFPFHF-WLPNAMAAPTPVSAYLHSATM 236
            +++ + A  +    W   S  L+L G   K+AQ P    +  +   APTPVS Y+ SA +
Sbjct: 870  ALLPQAALSMPVG-WLAVSAGLILAGLLMKAAQLPLRIDYQMHPAPAPTPVSGYI-SAVL 927

Query: 237  VKAGIYL-------------LARLSPIYASSDFWFYCLTIVGAVTALWCALLAFKQTDLK 283
            +K G Y              LAR++ + A        + ++ A+T L+   +A  Q  +K
Sbjct: 928  LKVGPYGVLKIMVALGAGGGLARIAGLGAWMPDPLVVVQVIAALTVLYAGAMAVVQNGVK 987

Query: 284  LMLAYSTNVALGKLTLLLGLGTEVALTAAVLFIFAHSFYKAALFMVVGNIDKATGTRERE 343
             +L YST   LG + L L LG+ + +   ++    H   K  LF+  G I         +
Sbjct: 988  RLLIYSTVSQLGYVLLGLSLGSALGVAGGLMHFVNHMMLKDILFLAAGCILAQAHVHSLD 1047

Query: 344  KLGNLKSVLLLSLIAAVIAALSKSGVAPMLGFLSKEYMYKSSVESGIAWISLVLLLINAL 403
             LG L   + ++    + A LS SG+ P  GF SK  +Y+ + + G   +++  L+ +  
Sbjct: 1048 DLGGLGRKMPITFGLFLFAGLSLSGIPPFNGFASKWLIYQGAFQGGHYLLAMAALMSSLF 1107

Query: 404  MVALAIALLYKPFFGQATKESESHPPKAIEQKKSLWLPAMG-LAIASFLLPVF------A 456
             +A  +   +  F G  +  + +     + +   + L  MG LA  S ++ VF       
Sbjct: 1108 TLAAVLKFTHSAFLGPLSPAAAT-----MREAPPVMLIPMGLLAAGSVIVGVFPGVALVP 1162

Query: 457  LDWINQHLVIPAVMAMDPNSVPQAAKLWQGFNIPLALSGITLVLGGVLY 505
            +  I   L +P + A     +P     W    + LAL  + L+  G LY
Sbjct: 1163 ISRIQAALGLPVIEASWLGGLPGPGG-WHPLTLTLALGAVGLI--GWLY 1208