Pairwise Alignments

Query, 891 a.a., proton-conducting membrane transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 1253 a.a., hydrogenase, CooM subunit, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  144 bits (364), Expect = 3e-38
 Identities = 104/377 (27%), Positives = 183/377 (48%), Gaps = 17/377 (4%)

Query: 61   LDGLSFLFASLITGIGALIQIYALAYMKEKAARFSFHLYLTLFMLAMLGVVVSDNILLLF 120
            LD LS+ F   +  IG L  +YA+ YM+    ++ F+ +    +  ++GV  S ++   F
Sbjct: 750  LDMLSYGFVLTVAVIGCLNMVYAVGYMEHSHTQWRFYTFFLFMVGGLMGVAASRDLYSFF 809

Query: 121  IFWELTTITSYLLIGFNHDKPVSRKNALQSLLVTGAGGLALLAGLILLGLMANSYQISVI 180
             FWE+ +  S   +  + + P + +   +       G   +  G++LL   A S     +
Sbjct: 810  TFWEIMSSWSLYCVIVHEEFPEALREGFKYFFFNVLGAAFMFLGVVLLTAGAGSPAFDAV 869

Query: 181  IEHADHIAQHPWFMPSLI-LVLLGAFTKSAQFPFHFWLP-NAMAAPTPVSAYLHSATMVK 238
              HA   +       + + L++LG   K+AQ PF   +  +   APTPVS Y+ S+ ++K
Sbjct: 870  --HAALPSMPVGLSATAVGLMVLGLVMKAAQLPFRIDVQMHPATAPTPVSGYI-SSVLLK 926

Query: 239  AGIYLLARL-------SPIYASSDFW-----FYCLTIVGAVTALWCALLAFKQTDLKLML 286
            + ++ LA+L       + +  ++ F         +  VG +T +  ALLA  Q+DLKL+L
Sbjct: 927  SALFGLAKLLLALGGGAVLVQAAGFTDGIGLMQVVAWVGGITIVMAALLAVLQSDLKLVL 986

Query: 287  AYSTNVALGKLTLLLGLGTEVALTAAVLFIFAHSFYKAALFMVVGNIDKATGTREREKLG 346
             YST   LG + L   LGT + +   +L +  H  +K  LF+V G +   T     ++LG
Sbjct: 987  IYSTVSQLGYMVLAFALGTPLGMAGGLLHLANHVLFKDLLFLVAGALILQTHKHSLDQLG 1046

Query: 347  NLKSVLLLSLIAAVIAALSKSGVAPMLGFLSKEYMYKSSVESGIAWISLVLLLINALMVA 406
             +   + ++L    I ALS  GV P  GF SK  +Y + ++ G   ++++ L+ + L +A
Sbjct: 1047 GIGRKMPVTLGVFAIGALSVVGVPPTNGFTSKWIIYHALMQQGEVMLAILSLVGSVLTLA 1106

Query: 407  LAIALLYKPFFGQATKE 423
                 L+  F GQ + +
Sbjct: 1107 YFAKYLHAAFLGQPSPD 1123



 Score =  134 bits (337), Expect = 4e-35
 Identities = 129/531 (24%), Positives = 238/531 (44%), Gaps = 55/531 (10%)

Query: 61  LDGLSFLFASLITGIGALIQIYALAYMKEKAARFSFHLYLTLFMLAMLGVVVSDNILLLF 120
           LD L+ LFA +  G+   +  Y++ Y+        ++ +L +   +++G+V + +    +
Sbjct: 274 LDPLARLFAVITGGVCLAVTAYSVGYITHARHSSGYYFFLMIMTGSLMGLVSTRSFGSFY 333

Query: 121 IFWELTTITSYLLIGFNHDKPVSRKNALQSLLVTGAGGLALLAGLILL--GLMANSYQIS 178
            FWEL T +SY L+  +   P + +  ++  ++  AG + +L GL++L  G  A+   ++
Sbjct: 334 GFWELMTWSSYFLV-VHEGTPRAFRAGVKYFVMCAAGAMFMLPGLLMLTNGGSADFDAVT 392

Query: 179 VIIEHADHIAQHPWFMPSLILVLLGAFTKSAQF-PFHFWLPNAM-AAPTPVSAYLHSATM 236
             +   D     P  + + +L+ L  F   A F P H WLP+A   AP+ +S  L S  +
Sbjct: 393 TAVRQLD-----PMLLKAALLLTLAGFAVKAGFVPVHGWLPDAHPVAPSSISGPL-SGLL 446

Query: 237 VKAGIYLLARL-------------SPIYASSDFWFYCLTIVGAVTALWCALLAFKQTDLK 283
            K GIY + R+                 A   +    +T +G +T  +  ++A +Q D+K
Sbjct: 447 TKTGIYGIVRVLFAICGMTVLLQTGEGIAGISWMGAAVTTLGVLTMAYGEVMALRQDDIK 506

Query: 284 LMLAYSTNVALGKLTLLLGLGTEVALTAAVLFIFAHSFYKAALFMVVGNIDKATGTRERE 343
            +LAYST   +G++  ++GLGT ++ T A+  +  H+  K  LF+  G +    G R+ E
Sbjct: 507 RLLAYSTMGQIGEIATIIGLGTWLSTTGALAHVLNHAIMKNLLFLCAGALVMRAG-RKLE 565

Query: 344 KLGNLKSVLLLSLIAAVIAALSKSGVAPMLGFLSKEYMYKSSVESGIAWISLVLLLIN-- 401
            L  +  ++  +    ++  LS  G+ P  GF SK  M + +V++G   ++  LLL +  
Sbjct: 566 DLAGMGRMMPWTAGCMMVGVLSIMGMPPFAGFASKYLMLQGAVQAGHPELAAALLLASLA 625

Query: 402 --ALMVALAIALLYKPFFGQATKESESHPPKAIEQKKSLWLPAMGLAIASFLLPVFALDW 459
                + +   L++ P  G   +E+    P A+   +   L   GL +   + P + L  
Sbjct: 626 GAVYYMRIIRVLVFMPRKGHPVQEA----PWAM---RLPMLVLAGLCVFLGIAPQYGLAL 678

Query: 460 INQHL-VIPAVMAMDPNSVPQAAKLWQGFNIPLALSGITLVLGGVLYLNYATLVTWLTRL 518
           +     ++ A   + P ++P     W  + + L + G  L     L  +   L  W T L
Sbjct: 679 VTPVADMLVAAGNLAPQTLPSLTVSWPPY-VVLTMLGAAL---PALLRHDRKLAGWATAL 734

Query: 519 VKPLPKAEQMFDAVLAYLATLASWQTQMLQQKRSSGYMLLFFAVLALILIY 569
           V            V A +A        ML    S G++L    +  L ++Y
Sbjct: 735 VL----------LVAAVVAAFTGRDLDML----SYGFVLTVAVIGCLNMVY 771



 Score = 41.6 bits (96), Expect = 3e-07
 Identities = 50/241 (20%), Positives = 90/241 (37%), Gaps = 11/241 (4%)

Query: 265 GAVTALWCALLAFK-QTDLKLMLAYSTNVALGKLTLLLGLGTEVALTAAVLFIFAHSFYK 323
           G V   W  L A   +  L  ++ Y      G   +  GLG+  A T  +LF       +
Sbjct: 17  GIVLLFWGTLAAIAARRRLDALIGYGAVADAGIALIGFGLGSATATTGGILFAAFQCLAR 76

Query: 324 AALFMVVGNIDKATGTREREKLGNLKSVLLLSLIAAVIAALSKSGVAPMLGFLSKEYMYK 383
              +  +  +    G+ E + L  ++  +  S +       +  G++P L    +  +  
Sbjct: 77  LLAYGALRPLMSKAGSAEADALRGIREAMPASAVLYGFGMFAALGISPFLVPEGRMLVTA 136

Query: 384 SSVESGIAWISLVLLLINALMVALAIALLYKPFFGQATKESESHPPKAIEQKKSLWLPAM 443
           ++V+SG   + L++ L  A+M  L +             E+    P    ++  L L  +
Sbjct: 137 AAVQSGGLLLPLLMALSAAIMAWLTVVATQTVCLEHGPWEASGITP----ERLPLHLAPV 192

Query: 444 GLAIASFLLPVFALDWINQHLVIPAVMAMDPNSVPQAAKLWQ-GFNIPLALSGITLVLGG 502
            LA+A   +   AL      +   A +   P S+P  A  W     +P A +      GG
Sbjct: 193 ALAVAGCGIGGHAL-----MVGAAAFLGHAPESLPALADGWHPAALVPYAGAFCVWAAGG 247

Query: 503 V 503
           V
Sbjct: 248 V 248