Pairwise Alignments

Query, 891 a.a., proton-conducting membrane transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 643 a.a., NADH dehydrogenase I, chain L (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  216 bits (549), Expect = 5e-60
 Identities = 128/395 (32%), Positives = 220/395 (55%), Gaps = 15/395 (3%)

Query: 45  WQVTWVP---GLDLNLSFRLDGLSFLFASLITGIGALIQIYALAYMKEKAARFSFHLYLT 101
           +  TW+P    L  +L   LD +S +   +I+ +  ++ IY+  YMK +     ++ +L+
Sbjct: 69  YNFTWLPFTETLRFDLGILLDPISVMMLIVISTVSLMVHIYSFGYMKGETGFQRYYAFLS 128

Query: 102 LFMLAMLGVVVSDNILLLFIFWELTTITSYLLIGFNHDKPVSRKNALQSLLVTGAGGLAL 161
           LF ++MLG+VV+ NI  +++FWEL  ++SYLLIGF + KP +   + ++ +VT    L  
Sbjct: 129 LFTMSMLGLVVATNIFQMYLFWELVGVSSYLLIGFYYTKPAAIAASKKAFIVTRFADLGF 188

Query: 162 LAGLILLGLMANSYQISVIIEHADHIAQHPWFMP-SLILVLLGAFTKSAQFPFHFWLPNA 220
           L G+++ G    ++  +   +    I+     +P +L L+ +G   KSA FP H WLP+A
Sbjct: 189 LIGILIYGYYGGTFGFTP--DTVSLISGGASMLPLALGLMFIGGAGKSAMFPLHIWLPDA 246

Query: 221 MAAPTPVSAYLHSATMVKAGIYLLARLSPIY-ASSDFWFYCLTIVGAVTALWCALLAFKQ 279
           M  PTPVSA +H+ATMV AG+YL+AR+ P++ A +    + +  VGA TA + A +A  Q
Sbjct: 247 MEGPTPVSALIHAATMVVAGVYLVARMFPLFIAYAPDTLHMIAWVGAFTAFYAASVACVQ 306

Query: 280 TDLKLMLAYSTNVALGKLTLLLGLGTE-------VALTAAVLFIFAHSFYKAALFMVVGN 332
           +D+K +LA+ST   +G + + LG+ T        +   A++  +F H+ +KA LF+  G+
Sbjct: 307 SDIKRVLAFSTISQIGFMMVALGVCTSMDPHHGGLGYMASMFHLFTHAMFKALLFLGAGS 366

Query: 333 IDKATGTREREKLGNLKSVLLLSLIAAVIAALSKSGVAPMLGFLSKEYMYKSSVESGIAW 392
           I  A  + E   +G L+  + ++    +IA L+ +G+ P  GF SK+ +  +  +   A 
Sbjct: 367 IIHAVHSNEMSAMGGLRKYMPITHWTFLIACLAIAGIPPFSGFFSKDEILAACFQYSPA- 425

Query: 393 ISLVLLLINALMVALAIALLYKPFFGQATKESESH 427
           +  V+ +I A+       L Y  F+G     + SH
Sbjct: 426 MGWVMTVIAAMTAFYMFRLYYGIFWGAEPPRASSH 460