Pairwise Alignments

Query, 498 a.a., Na+/H+ antiporter subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 502 a.a., NADH dehydrogenase (quinone) (NCBI) from Rhodospirillum rubrum S1H

 Score =  233 bits (594), Expect = 1e-65
 Identities = 152/499 (30%), Positives = 263/499 (52%), Gaps = 31/499 (6%)

Query: 8   LPVVISLLTAVAIFLAGRN----RW-LTNGLSVICSVINLFTGALLTITIYTHGPASIAF 62
           L VV+ L+ A    L  R      W L   L+ +   + L  G L      THGP++   
Sbjct: 9   LQVVVPLMAAPVCILLRRPGLCWAWALLIALTTLTMAVGLLAGVL------THGPSAYHL 62

Query: 63  GQWPAPFGIVFVADLLS-VGMVMVTAIIGLVSVIYAIADLSAKPSYARY---HALLHVLL 118
           G W  P+GI    DLLS + +V+VTA   LV ++YA A  +A+     +   + L  + L
Sbjct: 63  GDWSPPWGIELHVDLLSALVLVLVTATASLV-IVYARASFAAEIDPGHHTLAYCLFLLCL 121

Query: 119 AGVYGAFLTGDIFNLYVWFEVMLIASFGLMVLDANQQQIDGAIKYVLLNLISTLVFLLSI 178
            G+ G  +TGD FNL+V+ E+  ++S+ L+ L  +++ +  A  Y++L  +    +++ I
Sbjct: 122 TGLLGMAITGDAFNLFVFLEISSLSSYALVALGRDRRALYAAYHYLILGTVGATFYVIGI 181

Query: 179 GLLYGATGTLNLADLHDKAQSLAPEMKTMLAGLLLFA--FSIKAALFPLFAWLPASYHTL 236
           G LY  TGTLN+ DL  +  ++A   +T +AG++      S+K ALFPL  WLPA+Y   
Sbjct: 182 GFLYMMTGTLNMNDLAQRLPAVA-HSRTAVAGVVFLGVGLSLKLALFPLHKWLPAAYSYA 240

Query: 237 PSAIVALFAALLTKVGVYALLRVFTLVF-PLDGSGWQP-------VLLGIAALTMLTGVL 288
           PSA+ A  AA  TKV  Y ++R+F  V  P   +   P       +++ +A   +L+G  
Sbjct: 241 PSAVGAFLAATSTKVAFYVMVRLFLGVLAPAFSANLLPGPVSAREMVMVLALAAILSGSF 300

Query: 289 GAASQYDIKKILSFHIISQIGYMIMGLAIYTPLAITGAIFYVIHHILVKGNLFLIGGLIG 348
            A  Q D K++L++  +SQIG M++GL++++   + G + ++++H L+K +LF+  G + 
Sbjct: 301 SAIFQSDAKRLLAYSSVSQIGVMVLGLSLFSLDGVAGGLVHMLNHALIKASLFMALGCVF 360

Query: 349 RKYGTTQLTQLGGVYRAMPWLTFGFLLAAFSLAGFPPLSGFWGKFLVIKASLAAELYWLA 408
            + G+ ++  + G+ R MPW    F++   SL G P  +GF  K+ + ++++ AE +WLA
Sbjct: 361 LRIGSVEIADMAGIGRRMPWTMAAFVIGGLSLIGIPGTAGFISKWQLAQSAI-AEGWWLA 419

Query: 409 AIALLV-GLLTIFSMTKIWNEVFWKDAPAALQQ--ETLARSTLGLYALPILVLTLFSLVI 465
             AL+   LL +  + K+    +++ +PA       +  +    +   P+ +  L ++  
Sbjct: 420 VAALIASSLLAVVYVGKVIEAAYFRPSPAESPSGAPSAPQEAPAMMLAPLWIAALANIGF 479

Query: 466 GLAAQPFYQFATLAAEQLL 484
           GL        A  AA  L+
Sbjct: 480 GLNTTWTLGLAKRAASALM 498