Pairwise Alignments

Query, 498 a.a., Na+/H+ antiporter subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 1265 a.a., NADH dehydrogenase (quinone) (NCBI) from Rhodospirillum rubrum S1H

 Score =  176 bits (445), Expect = 6e-48
 Identities = 141/515 (27%), Positives = 248/515 (48%), Gaps = 42/515 (8%)

Query: 3    AIGLTLPVVISLLTAVAIFLAG----RNRW-LTNGLSVICSVINLFTGALLTITIYTHGP 57
            A+ + +PVV +L     + LA     R  W L   ++V+ +V+    G   T+   +   
Sbjct: 677  ALSVVMPVVETLSARGGLPLAALPPLRMEWSLAALIAVVGAVVVYILGKRSTVVAGSLSV 736

Query: 58   ASIAFGQWPAPFGIVFVA---DLLSVGMVMVTAIIGLVSVIYAIADLSAKPSYARYHALL 114
            A +A     A  GI+  +   DLLS     +  ++G ++++Y+I  ++   +  R+    
Sbjct: 737  AVMAL----ALAGILIQSGRYDLLSFWFAALIVVVGAINLLYSIGYMAHGHAQNRFFFFF 792

Query: 115  HVLLAGVYGAFLTGDIFNLYVWFEVMLIASFGLMVL-DANQQQIDGAIKYVLLNLISTLV 173
             +++ G+ G   + D+FN + ++EVM   +  L+++ +  +  +D   KY + N +    
Sbjct: 793  VMMIGGLLGVTASDDLFNFFAFWEVMSSWTLYLVIIHEETKDSLDEGTKYFIFNFVGASF 852

Query: 174  FLLSIGLLYGATGTLNLADLHDKAQSLAPEMKTMLAGLLLFAFSIKAALFPLFAWLPASY 233
              L + +L    GT  +A L   A S+      + AGL+L    +KAA  PL        
Sbjct: 853  LFLGVAILAAKAGTFEMALLPQAALSMPVGWLAVSAGLILAGLLMKAAQLPLRIDYQMHP 912

Query: 234  HTLPSAIVALFAALLTKVGVYALLRVFTLVFPLDG-------SGWQP----VLLGIAALT 282
               P+ +    +A+L KVG Y +L++   +    G         W P    V+  IAALT
Sbjct: 913  APAPTPVSGYISAVLLKVGPYGVLKIMVALGAGGGLARIAGLGAWMPDPLVVVQVIAALT 972

Query: 283  MLTGVLGAASQYDIKKILSFHIISQIGYMIMGLAIYTPLAITGAIFYVIHHILVKGNLFL 342
            +L     A  Q  +K++L +  +SQ+GY+++GL++ + L + G + + ++H+++K  LFL
Sbjct: 973  VLYAGAMAVVQNGVKRLLIYSTVSQLGYVLLGLSLGSALGVAGGLMHFVNHMMLKDILFL 1032

Query: 343  IGGLIGRKYGTTQLTQLGGVYRAMPWLTFG-FLLAAFSLAGFPPLSGFWGKFLVIKASLA 401
              G I  +     L  LGG+ R MP +TFG FL A  SL+G PP +GF  K+L+ + +  
Sbjct: 1033 AAGCILAQAHVHSLDDLGGLGRKMP-ITFGLFLFAGLSLSGIPPFNGFASKWLIYQGAFQ 1091

Query: 402  AELYWLAAIALLVGLLTIFSMTKIWNEVFWKD-APAALQQETLARSTLGLYALPILVLTL 460
               Y LA  AL+  L T+ ++ K  +  F    +PAA       R    +  +P+ +L  
Sbjct: 1092 GGHYLLAMAALMSSLFTLAAVLKFTHSAFLGPLSPAA----ATMREAPPVMLIPMGLLAA 1147

Query: 461  FSLVIGLAAQPFYQFATLAAEQLLTPTAYIHAVLG 495
             S+++G+       F  +A    L P + I A LG
Sbjct: 1148 GSVIVGV-------FPGVA----LVPISRIQAALG 1171



 Score =  166 bits (421), Expect = 3e-45
 Identities = 118/457 (25%), Positives = 213/457 (46%), Gaps = 37/457 (8%)

Query: 9   PVVISLLTAVAIFLAGRNRWLTNGLSVICSVINLFTGALLTITIYTHGPASIAFGQWPAP 68
           PV++  +   A+FL GR       +  I     L T  L  +       A +  G     
Sbjct: 232 PVLLPYVGGFALFLFGRFSAQARAVGAIA----LATATLALVA------ARLESGDLGGL 281

Query: 69  FGIVFVADLLSVGMVMVTAIIGLVSVIYAIADLSAKPSYARYHALLHVLLAGVYGAFLTG 128
           F ++F A             IGL   +Y++  +       RY   L +++  + G   T 
Sbjct: 282 FALIFAA-------------IGLAVTVYSVGYMKHGHGVNRYFFFLFLMIGSLIGVATTN 328

Query: 129 DIFNLYVWFEVMLIASFGLMVLDANQQQIDGAIKYVLLNLISTLVFLLSIGLLYGATGTL 188
            + N Y+++E+M   S+ L++ +   + +   +KY L+      V    I +L+   GT 
Sbjct: 329 HLGNFYLFWELMTWMSYLLVIHEQTAKALKAGMKYFLICASGAYVMHFGILVLHAQLGTF 388

Query: 189 NLADLHDKAQSLAPEMKTMLAGLLLFAFSIKAALFPLFAWLPASYHTLPSAIVALFAALL 248
            ++++     +L+P +  ++    L  F  KA LFPL++WLP ++   PS+I    + +L
Sbjct: 389 EISEIAPCIGTLSPALAGVVLATFLIGFMAKAGLFPLYSWLPEAHPVAPSSISGPMSGIL 448

Query: 249 TKVGVYALLRVFTLVFPLDGSGW----------QPVLLGIAALTMLTGVLGAASQYDIKK 298
           TK G+  ++++   +F +   G             VL+ +  +T+L G + A  Q DIK+
Sbjct: 449 TKAGILGMVKLLFGIFGVGALGQFGLFAGLSLPGAVLVALGGITLLLGEVQAYRQTDIKR 508

Query: 299 ILSFHIISQIGYMIMGLAIYTPLAITGAIFYVIHHILVKGNLFL-IGGLIGRKYGTTQLT 357
           +L++  ++QIG + M L + T LA+ G +F+V +H ++K  LF  +G LI R  G + L 
Sbjct: 509 LLAYSTLAQIGEITMVLGVGTSLALAGGLFHVTNHAVMKTMLFFAVGALILRSAGRS-LD 567

Query: 358 QLGGVYRAMPWLTFGFLLAAFSLAGFPPLSGFWGKFLVIKASLAAELYWLAAIALLVGLL 417
            L G+ + MP+      +   ++ G PP  GF  KFL+I A + A    +AA+ L+  ++
Sbjct: 568 DLKGLGKVMPFTGLCLGIGLLAIMGVPPFGGFVSKFLMIYACVEAGQVGVAAVILVGSVI 627

Query: 418 TIFSMTKIWNEVFWK--DAPAALQQETLARSTLGLYA 452
                 ++   VF++    P  ++     R  LG  A
Sbjct: 628 GALYYARVLRAVFFEPYTGPKVVEAPLTMRIALGALA 664



 Score = 86.7 bits (213), Expect = 5e-21
 Identities = 53/202 (26%), Positives = 105/202 (51%), Gaps = 1/202 (0%)

Query: 279 AALTMLTGVLGAASQYDIKKILSFHIISQIGYMIMGLAIYTPLAITGAIFYVIHHILVKG 338
           AAL ++   L   +  D+ ++L++  I++IGY++MGL I T    TGA+ ++ +  +++ 
Sbjct: 12  AALMLIGEGLALRNVRDLARMLTYSTIAEIGYVLMGLGIGTAAGETGAVMHLGYQAIMRA 71

Query: 339 NLFLIGGLIGRKYGTTQLTQLGGVYRAMPWLTFGFLLAAFSLAGFPPLSGFWGKFLVIKA 398
            + +    + R+ G+++L  L G    MP+++  F    FS+ G  P  G + KF+++ A
Sbjct: 72  LVVVAAWHLIRRSGSSKLDALVGSVERMPFVSLMFGFGLFSVMGLSPFKGSFSKFVILYA 131

Query: 399 SLAAELYWLAAIALLVGLLTIFSMTKIWNEV-FWKDAPAALQQETLARSTLGLYALPILV 457
           ++    + LAA+  +  ++  F       +V F + +   L  + +    + +  LPI+V
Sbjct: 132 AIENGYWGLAAVGTVASIIAAFYYIHTIQQVCFQRQSHGILGDKPIPFFQIPVGQLPIVV 191

Query: 458 LTLFSLVIGLAAQPFYQFATLA 479
           L L ++V+ L   PF   A  A
Sbjct: 192 LALVTVVMSLDPDPFLMLAANA 213