Pairwise Alignments

Query, 498 a.a., Na+/H+ antiporter subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 505 a.a., NADH-quinone oxidoreductase subunit M from Rhodopseudomonas palustris CGA009

 Score =  146 bits (369), Expect = 1e-39
 Identities = 124/501 (24%), Positives = 237/501 (47%), Gaps = 29/501 (5%)

Query: 1   MTAIGLTLPVV-----ISLLTAVAIFLA-GRNRWLTNGLSVICSVINLFTGALLTITIYT 54
           M+A  +T PV+     + +L A  ++LA G +         I     L T A+  + ++ 
Sbjct: 1   MSASIMTWPVLSVVTFLPVLGAALVYLARGEDEAARRNARWISLWTTLITFAVSLLLVWH 60

Query: 55  HGPASIAF-----GQWPAPFGIVFVA-DLLSVGMVMVTAIIGLVSVIYAIADLSAKP-SY 107
             PA+  F       W        +  D +S+ +V++T  I    +I +   ++ +   Y
Sbjct: 61  FDPANPGFQFVEKAPWLGNTITYHMGLDGISLPLVILTTAIMPFCIIASWRSVTVRVREY 120

Query: 108 ARYHALLHVLLAGVYGAFLTGDIFNLYVWFEVMLIASFGLMVLDANQQQIDGAIKYVLLN 167
                +L  L+ G + A    D+   Y++FE  LI  F ++ +    +++  + K+ L  
Sbjct: 121 MIAFLILETLMIGTFSAL---DLVLFYLFFEGGLIPMFLIIGIWGGPRRVYASFKFFLYT 177

Query: 168 LISTLVFLLSIGLLYGATGTLNLADLHDKAQSLAPEMKTMLAGLLLFA-FSIKAALFPLF 226
           L+ +++ LL+I  LY   GT ++  L    ++  P      A L  FA F++K  ++P+ 
Sbjct: 178 LLGSVLMLLAIMALYWNAGTTDIPTL---MRTSVPSGLQTWAWLAFFASFAVKMPMWPVH 234

Query: 227 AWLPASYHTLPSAIVALFAALLTKVGVYALLRVFTLVFPLDGSGWQPVLLGIAALTMLTG 286
            WLP ++   P+A   + AA+L K+G Y  LR    +FP   + + P++  ++ + ++  
Sbjct: 235 TWLPDAHVEAPTAGSVVLAAILLKMGGYGFLRFSLPMFPDASAYFAPLIYTLSVIAIIYT 294

Query: 287 VLGAASQYDIKKILSFHIISQIGYMIMGLAIYTPLAITGAIFYVIHHILVKGNLFLIGGL 346
            L A  Q DIKK++++  ++ +G++ MG+   T   + GA+F ++ H +V G LFL  G+
Sbjct: 295 SLVALMQEDIKKLIAYSSVAHMGFVTMGIFAGTTQGVAGAVFQMVSHGIVSGALFLCVGV 354

Query: 347 IGRKYGTTQLTQLGGVYRAMPWLTFGFLLAAFSLAGFPPLSGFWGKFLVIKASLAAEL-- 404
           +  +  T ++   GG+   MP     F++   +  G P  SGF G+FL +  +    +  
Sbjct: 355 VYDRMHTREIAAYGGLVNRMPLYALVFMVFTMANVGLPGTSGFVGEFLTLLGTFRVNIPT 414

Query: 405 YWLAAIALLVGL-LTIFSMTKIWNEVFWKDAPAALQQETLARSTLGLYALPILVLTLFSL 463
             LA   +++     ++   K+      K A A+++  T      GL   P+LVLT   +
Sbjct: 415 ATLATTGVILSAGYALWLYRKVVFGAMTKPALASIKDLTWRE---GLMMAPLLVLT---I 468

Query: 464 VIGLAAQPFYQFATLAAEQLL 484
           + G   +P    +  + +QL+
Sbjct: 469 LFGFYPKPVLDMSAASVQQLV 489