Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., alpha-ketoglutarate TRAP transporter, 4TM/12TM components (from data) from Pseudomonas stutzeri RCH2

 Score =  251 bits (641), Expect = 8e-71
 Identities = 165/513 (32%), Positives = 257/513 (50%), Gaps = 55/513 (10%)

Query: 25  RTISVLCVLLSLAHIWFNTLSTWSELWISAIHFAGFAMICALWYPALPRWRGS-KVALAF 83
           R +  + +L S+  I        S   + A H     ++  L YPA    RG+ K     
Sbjct: 16  RALFYVALLFSIYQIVTAAFHPVSSQVLRAGHVGFLLLLVFLCYPA----RGNGKPFQPV 71

Query: 84  DVLLALLALACLIYLMLAEDALYERGVKFVTSDWVFSILAILIVMEMIRRTMGWFIPTLI 143
             LL L   A   Y    E  L +R     T+D V  +  I++V E  RR MG  +P + 
Sbjct: 72  AWLLGLAGFATFFYQWYFEADLIQRSGDMTTADMVVGLTLIVLVFEAARRVMGIALPIIC 131

Query: 144 LICLTYVSVWGKWAGGIFHFPGLSAETLLYRSFYSSEGMFGSIAAISWSFVFMFILFGAF 203
            + L Y  + G++  G     G   + ++ +  + +EG++G+   +S +++F+FILFG+F
Sbjct: 132 ALFLAY-GLLGEYLPGDLAHRGYYLDQIVNQLSFGTEGLYGTPTYVSATYIFLFILFGSF 190

Query: 204 LVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSSVANTVSTGVITIPMMKK 263
           L ++G+     D +    G  +GGP  ++V++S LMG+++GS VAN V+TG  TIP+MK+
Sbjct: 191 LEQAGMIKLFTDFAMGLFGHKLGGPAKVSVVSSALMGTITGSGVANVVTTGQFTIPLMKR 250

Query: 264 AGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIPYVDIVAVSFIPALIYFLSVA 323
            G+   FA GVEA +S G Q+MPPVMGA AFIMA    +P+V+I   + IPAL+YF SV 
Sbjct: 251 FGYRPAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPALLYFGSVF 310

Query: 324 FFVRIEAKRMGVQIVTTSQEP-FMKVLLSGWHNLIPLAVLVTLLVVGFTPTYAA--GLSI 380
           + V +EAKR G++ +   + P  M  +   W+ LIPL VLV LL  G TP +A   GL++
Sbjct: 311 WMVHLEAKRAGLKGLPKDECPSAMAAVKERWYLLIPLVVLVWLLFSGRTPMFAGTIGLAL 370

Query: 381 LSVIV----------------------------------------------ASWFSKNHK 394
            ++++                                                WF K  +
Sbjct: 371 TAIVILGSAIILKVSNFALRIAFWIALGLLCAGFFQLGIGVIFGVIAALVAVCWFIKGGR 430

Query: 395 MGPKAIIEALEQGAKNMATTAVLLVGIGLVINVISTTGIGNTFSLMINNWANGDLLTMLV 454
                 + AL +GA++     +    +G++I V+S TG+ +TF+  I      +L   L+
Sbjct: 431 DTLVICLHALVEGARHAVPVGIACALVGVIIGVVSLTGVASTFAGYILAVGENNLFLSLL 490

Query: 455 LITLASLVLGMGLPVTAAYIVLGTLSAPALYKL 487
           L  L  LVLGMG+P    YI+  +++APAL  L
Sbjct: 491 LTMLTCLVLGMGIPTIPNYIITSSIAAPALLDL 523