Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., TRAP transporter, DctM subunit from Pseudomonas stutzeri RCH2

 Score = 84.3 bits (207), Expect = 1e-20
 Identities = 74/296 (25%), Positives = 135/296 (45%), Gaps = 12/296 (4%)

Query: 197 FILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSSVANTVSTGVI 256
           F+L GAF+   GV   ++D + A  G + GG    AVLA  L  ++SGSS A   + G I
Sbjct: 62  FLLAGAFMTTGGVARRLIDFANACVGHIRGGLAIGAVLACMLFAALSGSSPATVAAVGSI 121

Query: 257 TIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIPYVDIVAVSFIPAL 316
            I  M ++G+P  F AG+   A T G L+PP +    +  A+ T +  + +  V  +P +
Sbjct: 122 AIAGMVRSGYPQAFGAGIVCNAGTLGILIPPSVVMVVYAAATETSVGKLFMAGV--VPGI 179

Query: 317 IY--FLSVAFFVRIEAKRMGVQIVTTSQEPFMKVLLSGWHNLIPLAVLVTLLVVGFTPTY 374
           +    L +A ++    K +      + +E       + W  L+ + +L  +    FTPT 
Sbjct: 180 LLGGALMIAIYIIAVKKNLPALPRASFREWLSAARKAIWGLLLMVIILGGIYSGMFTPTE 239

Query: 375 AAGL-SILSVIVASWFSKNHKMG--PKAIIEALEQGAKNMATTAVLLVGIGLVINVISTT 431
           AA + ++ S  VA +  K+  +   PK ++E+     K       ++    L  +V++T 
Sbjct: 240 AAAVAAVYSAFVALFVYKDISLRDCPKVLLES----GKLSIMLMFIIANAMLFAHVLTTE 295

Query: 432 GIGNTFSLMINNWANGDLLTMLVLITLASLVLGMGLPVTAAYIVLGTLSAPALYKL 487
            I    +  +   A       L+++ +  L+ G  +  +A  ++L  +  P   +L
Sbjct: 296 QIPQAITAWVIE-AGLQPWMFLLVVNIVLLIAGAFMEPSAIILILAPILFPIAIQL 350