Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 850 a.a., TRAP transporter, 4TM/12TM fusion protein from Pseudomonas stutzeri RCH2

 Score =  271 bits (692), Expect = 1e-76
 Identities = 224/745 (30%), Positives = 354/745 (47%), Gaps = 102/745 (13%)

Query: 7   QELEKFEVPTRTRFGWVTRTISVLCVLLSLAHIWFNT-------LSTWSELWISAIHFAG 59
           +EL   +V  R+  G +   I+ L +L SL  +W  +           ++    +IH A 
Sbjct: 9   EELIAQDVGARSPAGPMAAVIAGLALLWSLFQLWIASPLPFVLGFGVLNDTETRSIHLAF 68

Query: 60  FAMICALWYPALPRWRGSKVALAFDVLLALLALACLIYLMLAEDALYERGVKFVTSDWVF 119
             ++  L YPA  R    +V L  D+ L L+A A   YL +A   L +R     T D V 
Sbjct: 69  ALLLAFLAYPAFKRSPRDRVPLV-DIALGLVAAASAAYLFIAYSQLAQRPGNLTTMDLVT 127

Query: 120 SILAILIVMEMIRRTMGWFIPTLILICLTYVSVWGKWAGGIFHFPGLSAETLLYRSFYSS 179
           + + I +++E  RR +G  +  + L+ L Y SV G W  G+    G+S   L    + ++
Sbjct: 128 ACIGIPLLLEATRRALGPPLAIIALVFLVY-SVAGPWMPGLLAHRGVSFTALANHQWITT 186

Query: 180 EGMFGSIAAISWSFVFMFILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLM 239
           EG+FG    +S SFVF+F+LFGA L R+G G Y + ++ +  G   GGP   AV+ASG+ 
Sbjct: 187 EGVFGIALGVSTSFVFLFVLFGALLERAGAGHYFIQLAFSMLGHFRGGPAKAAVVASGMT 246

Query: 240 GSVSGSSVANTVSTGVITIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMASY 299
           G +SGSS+AN V+TG  TIPMMK+ GF A  A  VE A+S  GQ+MPPVMGA AF+M  Y
Sbjct: 247 GLISGSSIANVVTTGTFTIPMMKRTGFSAEKAGAVEVASSVNGQIMPPVMGAAAFLMVEY 306

Query: 300 TQIPYVDIVAVSFIPALIYFLSVAFFVRIEAKRMGVQIVTTSQ--EPFMKVLLS------ 351
             IPYV+++  +F+PALI ++++ + V +E+ ++G+Q +  +   +P+M+ L+       
Sbjct: 307 VGIPYVEVIKHAFLPALISYIALIYIVHLESMKLGLQALPRANVAKPWMQRLIGFVFGAA 366

Query: 352 -------------GWHNLIPLAVLVTLLVVGFTPTYAAGLSILSVIVASWFSKNHKMGPK 398
                        GW  L PL     L V+G     A     L  I AS     H+  P 
Sbjct: 367 LISGLSLGVYYGLGW--LKPLLGDSALWVIG--ALLAVVYLGLLKIAASNPPLPHE-DPN 421

Query: 399 AIIEALEQGAKNMATTAVLLVGIGLVINVISTTGIGNTFSLMINNWAN------GDLLTM 452
             +E L +      T  VLL G+  ++ V+        + LMI   +       G ++ +
Sbjct: 422 MPLEKLPE------TRPVLLSGLHFLLPVVVL-----VWCLMIERLSPGLSAFWGSVMLV 470

Query: 453 LVLITLASL--------------------------------VLGMGLPVTAAYIVLGTLS 480
           ++L+T   L                                ++G+G+   AA I++G +S
Sbjct: 471 IILLTQRPLLSWMRHDRSHPDGTFMDGVIDLREGLIAGARNMIGIGIATAAAGIIVGAVS 530

Query: 481 APALYKLLAESQLVDLMVSGQLPEQAKAIFMLAAPDQLSL-LNAPMAAEKAHELISLVPA 539
              +  +LA+  LV+L+  G L      + ML     LSL L   +     + ++S + A
Sbjct: 531 QTGVGLVLAD--LVELLSMGNL------LLMLLLTAFLSLILGMGLPTTANYIVVSSLLA 582

Query: 540 DFVETLLQQSLGLEAIGLALLSAHLIIFWLSQDSNVTPPVCLTAFAAATIAKTPPMRTGF 599
             +  L QQ+     + + L++ HL +F+    ++VTPPV L +FAAA ++K  P+RTG 
Sbjct: 583 PVIVALGQQN----GLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSKGDPIRTGV 638

Query: 600 TAWKIAKGLYLVPVLIAYTQ---LISWDVATVVTIGIFAIFGTYAMIGAIEGYLEGRLNL 656
           TA+  +     +P L  +     LI  D    V I I A           +GY   R   
Sbjct: 639 TAFYYSLRTAALPFLFIFNTDLLLIGVDFWHGVLIFIVATIAMLVFAAGTQGYFLVRSRW 698

Query: 657 LWRLLLAVIGVLLVWPSLPIWIRLV 681
              +LL ++   L  P    W+ ++
Sbjct: 699 YESVLLLLVAFTLFRPG--FWMDMI 721