Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 466 a.a., alpha-ketoglutarate TRAP transporter, large permease component (from data) from Shewanella amazonensis SB2B

 Score = 80.1 bits (196), Expect = 2e-19
 Identities = 83/304 (27%), Positives = 135/304 (44%), Gaps = 30/304 (9%)

Query: 197 FILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSSVANTVSTGVI 256
           FIL  AFL   GV   I+D +  + G + GG    +V+A  L  +VSGSS A   + G I
Sbjct: 63  FILSSAFLSTGGVARRIIDFAMDSVGHIRGGLAMASVMACMLFAAVSGSSPATVAAIGSI 122

Query: 257 TIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIPYVDIVAVSFIPAL 316
            I  M +AG+P +FAAGV   + T G L+PP       + A+ T++    +     IP L
Sbjct: 123 VIVGMVRAGYPQKFAAGVITTSGTLGILIPP--SIVMLVYAAATEVSAARMFMAGLIPGL 180

Query: 317 I--YFLSVAFFVRIEAKRM------GVQIVTTSQEPFMKVLLSGWHNLIPLAVLVTLLVV 368
           +    L VA ++    K +      GV+ ++ S    M  L       +   VL ++   
Sbjct: 181 LMGVLLMVAIYIVARIKNLPSRPFPGVKALSLSSAKAMGGL------ALIFIVLGSIYGG 234

Query: 369 GFTPTYAAGLSILSVIVASWFSKNHKMGPKAIIEALEQGAKNMATTA--VLLVGIGLV-- 424
             +PT AA ++ +   + + F     +GP   +   ++G   +A     +L VG+GL+  
Sbjct: 235 VASPTEAAAVACVYAYLVAVFG-YRDIGPLKEVPWRKEGEAILAAIVRNLLHVGLGLIKT 293

Query: 425 ---INVISTTGIGNTFSLMINNWANGDLLTMLVLIT------LASLVLGMGLPVTAAYIV 475
                + +    G   S+M+       +L   VL T      +A  ++G GLP     I+
Sbjct: 294 PTDKEIRNVVRDGAKVSIMLLFIIANAMLFAHVLTTERIPHIIAETIVGWGLPPWGFLII 353

Query: 476 LGTL 479
           +  L
Sbjct: 354 VNLL 357