Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 430 a.a., TRAP transporter large permease from Rahnella sp. WP5

 Score = 86.7 bits (213), Expect = 2e-21
 Identities = 82/342 (23%), Positives = 156/342 (45%), Gaps = 30/342 (8%)

Query: 197 FILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSSVANTVSTGVI 256
           FIL GA +   G+   ++  +    G + GG   + ++AS   G++SGSSVA+T S G +
Sbjct: 61  FILAGAIMAEGGIARRLVSFAYIFVGFIRGGLSLVNIVASTFFGAISGSSVADTASIGSV 120

Query: 257 TIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIPYVDIVAVSFIPAL 316
            IP M+K G+P  FAA V A+ S    L PP   +  + +A+   +    +     +P L
Sbjct: 121 MIPEMEKKGYPRDFAAAVTASGSVQAILTPPSHNSVIYSLATGGTVSIAALFIAGILPGL 180

Query: 317 IYFLSVAFFVRIEAKRMGVQIVTTSQEPF---MKVLLSGWHNLIPLAVLVTLLVVG-FTP 372
           +  L++     + A + G       + PF   +K+ +     L+ + +++  ++ G FT 
Sbjct: 181 LLSLTLMVMCVVFAHKRGYP--KGERVPFRQALKIFIDTLWGLMTIVIIMGGILSGIFTA 238

Query: 373 TYAAGLSIL-SVIVASWFSKNHKMG--PKAIIEALEQGAKNMATTAVLLVGIGLVINVIS 429
           T +A ++ L S  V  +  +++K    PK +   ++       +  ++L+G       + 
Sbjct: 239 TESAAIACLWSFFVTMFIYRDYKWSELPKLMYRTVK-----TVSIVMILIGFAASFGAVM 293

Query: 430 T-----TGIGNTFSLMINN------WANGDLLTMLVLITLASLVLGMGLPVTAAYIVLGT 478
           T       I   F+ + +N      W N  LL +  L+ +A ++L +  PV    +VL  
Sbjct: 294 TYMQLPMRITEFFTSISDNKYVILMWINIMLLVIGTLMDMAPIILIL-TPVLLP-VVLSL 351

Query: 479 LSAPALYKLLAESQLVDLMVSGQLPEQAKAIFMLAAPDQLSL 520
              P  + ++    LV+L +    P     +F+ +A  + S+
Sbjct: 352 GIDPVHFGMI---MLVNLGIGLITPPVGSVLFVASAVSKQSI 390