Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., TRAP transporter permease from Rhodopseudomonas palustris CGA009

 Score =  210 bits (535), Expect = 2e-58
 Identities = 174/631 (27%), Positives = 290/631 (45%), Gaps = 100/631 (15%)

Query: 66  LWYPALPRWRGSKVALAFDVLLALLALACLIYLMLAEDALYERGVKF---VTSDWVFSIL 122
           L +P     R  ++ L +DV L +L +   + LM       E G +F    T  ++  ++
Sbjct: 89  LIFPGTSTARLDRIPL-YDVALFVLTIGAALVLMSTIRKAAEAGWEFGGAPTHVFIAGLV 147

Query: 123 AILIVMEMIRRTMGWFIPTLILICLTYVSVWGKWAGGIFHFP-GLSAETLLYRSFY---S 178
              ++ME +RRT GW +    L+C+   +V+  +AG  +  P G S  TL   + Y   S
Sbjct: 148 MWALLMEALRRTGGWSL----LLCIFPFTVYPLFAGARWLGPLGGSQSTLEQATAYHVLS 203

Query: 179 SEGMFGSIAAISWSFVFMFILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGL 238
            E + G         V  F++FG  L+ +G G + +++S +  G   GG   + + AS L
Sbjct: 204 GESLLGIPIQAFADTVIGFLVFGTALMLTGAGKFFINLSFSICGTFRGGAAKVCIFASAL 263

Query: 239 MGSVSGSSVANTVSTGVITIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMAS 298
           +G +SGS ++N ++ G +TIP+MKK+GF A +AA +EA ASTG  L PPVMGA AF++A 
Sbjct: 264 LGMMSGSIISNVLTAGTMTIPVMKKSGFRASYAAAIEACASTGAVLAPPVMGATAFVIAQ 323

Query: 299 YTQIPYVDIVAVSFIPALIYFLSVAFFVRIEAKRMGVQIVTTSQEPFM-KVLLSGWHNLI 357
           +  + Y ++   + +PA +Y++ +   V   A R G++ +  S+ P + + L  GW+   
Sbjct: 324 FLNVSYAEVALAAIVPAALYYIGLFMQVDAYAARHGLEGIPRSELPSLWQTLKEGWYYAF 383

Query: 358 PLAVLVTLLVV----GFTPTYAAGLSILSVIVASWFSKNHKMGPKAIIEALEQGAKNMAT 413
            +A+LV +L+        P YA  L +   ++   FSK  +    +I+  LE   +    
Sbjct: 384 VIALLVVMLLYFKRESHAPFYATALLL---VLNQIFSKETRWTLGSIVRFLEVNGRTFVE 440

Query: 414 TAVLLVGIGLVINVISTTGIGNTFSLMINNWANGDLLTMLVLITLASLVLGMGLPVTAAY 473
              +L G GL+I   S TG+ ++ +         DLL                       
Sbjct: 441 LIGILAGCGLLIGAFSMTGVISSLA--------ADLLR---------------------- 470

Query: 474 IVLGTLSAPALYKLLAESQLVDLMVSGQLPEQAKAIFMLAAPDQLSLLNAPMAAEKAHEL 533
                L+    + LLA   +  L++   L   A  IF       L++L AP         
Sbjct: 471 -----LAGDNAFLLLAMCAITSLILGLGLTTTACYIF-------LAILVAP--------- 509

Query: 534 ISLVPADFVETLLQQSLGLEAIGLALLSAHLIIFWLSQDSNVTPPVCLTAFAAATIAKTP 593
                             LE +GL  ++ H+ IF+    S++TPPV + +FAAA IA +P
Sbjct: 510 -----------------ALEKLGLNRMAVHMFIFYWGMLSSITPPVAIASFAAAGIAGSP 552

Query: 594 PMRTGFTAWKIAKGLYLVPVLIAYTQ--LISWDVATVVTIGI--FAIFGTYAMIGAIEGY 649
            M+TG+ +  +   +Y +P         ++      +  +G+   A  GT  + G I+GY
Sbjct: 553 AMKTGWESMWVGSIIYFIPFFFVMNPALVLQGPDPYLAALGLLTLAAAGTLCICGGIQGY 612

Query: 650 LEGRLNLL------WRLLLAVI--GVLLVWP 672
             G  NL       W L +A++  G +L  P
Sbjct: 613 QVGIGNLRHAGALEWPLRVALVIGGFVLATP 643