Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 869 a.a., TRAP transporter, 4TM/12TM fusion protein from Phaeobacter inhibens DSM 17395

 Score =  221 bits (563), Expect = 1e-61
 Identities = 190/677 (28%), Positives = 316/677 (46%), Gaps = 86/677 (12%)

Query: 55  IHFAGFAMICALWYPALPRWRGSKVALAFDVLLALLALACLIYLMLAEDALYERGVKFVT 114
           IH A    +    YPAL      ++ +  D +LAL+     +Y  +  + +   G K   
Sbjct: 72  IHLAFAIFLAYAAYPALKSSPTDRIPVQ-DWILALIGTFTALYGYIFYEKIVNSGGKGDD 130

Query: 115 SDWVFSILAILIVMEMIRRTMGWFIPTLILICLTYVSVWG-KWAGGIFHFPGLSAETLLY 173
            D +F+ + ++++ E  RR +G  +  +  + + YV     +    +  + G S +  + 
Sbjct: 131 IDTIFAAIGLVLLFEGARRALGPAMAIVASVFMLYVFFGSSELVPDVIRWKGASLDRAME 190

Query: 174 RSFYSSEGMFGSIAAISWSFVFMFILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAV 233
           + + +SEG+FG    +S  FVF+F+LFGA L ++G G+Y + ++  A G + GGP   AV
Sbjct: 191 QMWITSEGVFGIALGVSTKFVFLFVLFGALLDKAGAGNYFIKMAFGALGHLRGGPAKAAV 250

Query: 234 LASGLMGSVSGSSVANTVSTGVITIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGA 293
           + S   G +SGSS+AN V+TG  TIP+MK+ GF +  A  VE A+S  GQ+MPPVMGA A
Sbjct: 251 VGSAATGLISGSSIANVVTTGTFTIPLMKRVGFSSEQAGSVEVASSVNGQIMPPVMGAAA 310

Query: 294 FIMASYTQIPYVDIVAVSFIPALIYFLSVAFFVRIEAKR-----MGVQIVTTS------- 341
           F+M  Y  I YV+++  +F+PA I ++++ + V +EA +     +G ++V+         
Sbjct: 311 FLMVEYVGISYVEVITHAFLPAAISYIALVYIVHLEAVKRNMPTLGNRVVSMGRTIGGMA 370

Query: 342 -------------QEPFMKV-------------------------LLSGWHNLIP---LA 360
                        Q P   +                         L +G  +L+P    A
Sbjct: 371 AFFAGFAALCYGIQYPIKAITAAIPGASGLVLSLLVVAAYLGLLWLAAGTDDLVPDDPNA 430

Query: 361 VLVTLLVVGFTPTYAAGLS-ILSVIVASWFSKNHKMGPKAIIEALEQGAKNMATTAVLLV 419
             V L VVG    Y AGL  +L +IV  +F          +IE    G      TA+L V
Sbjct: 431 AEVELPVVG--EIYKAGLHYLLPIIVLVYF---------LMIEQKSPGLSAFWATALLFV 479

Query: 420 GIGLVINVISTTGIGNTFSLMINNWANGDLLTMLVLITLASLVLGMGLPVTAAYIVLGTL 479
              +++       +    S + +++ +G       LI  A  ++G+ L    A +++GT+
Sbjct: 480 ---ILLTQKPLKALFRGQSTLAHSFLDGVHDLWNGLIDGARNMIGIALATATAGVIVGTV 536

Query: 480 SAPALYKLLAESQLVDLMVSGQLPEQAKAIFMLAAPDQLSL-LNAPMAAEKAHELISLVP 538
           +   + ++++E  LV+LM  G L      I ML     LSL L   +     + ++S + 
Sbjct: 537 TLTGVGQVMSE--LVELMSGGNL------ILMLIMVGLLSLVLGMGLPTTANYIVVSSLM 588

Query: 539 ADFVETLLQQSLGLEAIGLALLSAHLIIFWLSQDSNVTPPVCLTAFAAATIAKTPPMRTG 598
           A  V  L  QS     + + L++ HL +F+    ++VTPPV L +FAAA ++    +RTG
Sbjct: 589 AGVVVELGAQS----GLVVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDAIRTG 644

Query: 599 FTAWKIAKGLYLVP-VLIAYTQLISWDVATV--VTIGIFAIFGTYAMIGAIEGYLEGRLN 655
           F A+  +     +P V I  T L+  DV  V  + + I A     A       Y   R  
Sbjct: 645 FVAFFYSLRTVALPFVFIFNTDLLLIDVGWVQGILVAISATIAILAFTAGTMNYFITRNR 704

Query: 656 LLWRLLLAVIGVLLVWP 672
           +   +LL ++   L  P
Sbjct: 705 IYESVLLVLVAFALFRP 721