Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., TRAP transporter, subunit DctM from Phaeobacter inhibens DSM 17395

 Score = 87.8 bits (216), Expect = 1e-21
 Identities = 111/476 (23%), Positives = 210/476 (44%), Gaps = 51/476 (10%)

Query: 137 WFIPTLILICLTYVSVWG---KWAGGIFHFPGLSAE-TLLYRSFYSSEGMFGSIAAISWS 192
           WF+P  + + L  + V+       G +    G   + TLLYR+ Y+    F  +A     
Sbjct: 4   WFLPLFLFLLLIGLPVFFCLLAAPGALLWLNGQERDLTLLYRNLYNGMDSFPLMA----- 58

Query: 193 FVFMFILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSSVANTVS 252
            +  F+L G  + R G+   +++ S+A  G + GG   + +L+S L   +SGS+VA+T +
Sbjct: 59  -IPFFMLAGELMNRGGITVRLVEFSQALMGHLRGGLAQVNILSSILFAGLSGSAVADTSA 117

Query: 253 TGVITIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIPYVDIVAVSF 312
            G + IP M++ G+  +FAA V AA+S  G ++PP   +G  I+ +Y      + VA  F
Sbjct: 118 LGSMLIPAMEREGYSRKFAAAVTAASSVIGPIIPP---SGIMIIYAYVM---GESVAALF 171

Query: 313 IPALI--YFLSVAFFVRIEAKRMGVQIVTTSQEPFMKV---LLSGWHNLIPLAVLVTLLV 367
           +  ++    + V   + + A     ++    +  F  V   ++  W +   + + + LL+
Sbjct: 172 LAGIVPGVLVGVGLMIMVRAMADRYELPAARRVVFDSVEIGVMERWFSFGLVRLNLGLLL 231

Query: 368 VGFTPT---YAAGLSILSVIVASWFSKNHKMGPKAIIEALEQGAKNMAT----TAVLLVG 420
             F P      A +  L+   A  F+    +G + ++    +     A     T VL++G
Sbjct: 232 AQFVPLAEGAGAQMKWLAFFGAVLFAHGLMLGLRRVVSPAFRTICKRAVVPLQTPVLILG 291

Query: 421 IGLVINVISTT---GIGNTFSLMINNWANGDLLTMLVLITLASLVLGMGLPVTAAYIVLG 477
            G++  V + T    +   ++L+I+    G +     L  L  +    G+      +++G
Sbjct: 292 -GILAGVFTPTEAAAVAVAYALLISFLVLGSMR----LADLPQVFSRAGITSAVVLLLVG 346

Query: 478 -TLSAPALYKLL-AESQLVDLMVSGQLPEQAKAIFMLAAPDQLSLLNAPMAAEKAHELIS 535
             +S   +  L  A  QL D +++  L E    +  L     L L    M  +    +I 
Sbjct: 347 AAMSFKTVVSLSHAPEQLADFILT--LSENPLILLFLI---NLLLFVVGMFLDAGPAIII 401

Query: 536 LVPADFVETLLQQSLGLEAIGLALLSAHLIIFWLSQDSNVTPPVCLTAFAAATIAK 591
           L P   +   +   LG+E++  A++    +   L+     TPP+ L  F AA +++
Sbjct: 402 LGP---ILGPVFTDLGVESVHFAIIMCVNLTVGLA-----TPPMGLVLFVAAAVSQ 449